View source for 8jat


==Crystal structure of the 3-ketodihydrosphingosine reductase TSC10 from Cryptococcus neoformans==
<StructureSection load='8jat' size='340' side='right'caption='[[8jat]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8jat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptococcus_neoformans_var._neoformans_JEC21 Cryptococcus neoformans var. neoformans JEC21]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8JAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8JAT FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8jat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8jat OCA], [https://pdbe.org/8jat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8jat RCSB], [https://www.ebi.ac.uk/pdbsum/8jat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8jat ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TSC10_CRYNJ TSC10_CRYNJ] Catalyzes the reduction of 3'-oxosphinganine (3-ketodihydrosphingosine/KDS) to sphinganine (dihydrosphingosine/DHS), the second step of de novo sphingolipid biosynthesis.[UniProtKB:P38342]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The second step in the de novo sphingolipid biosynthesis is the reduction of 3-ketodihydrosphingosine by 3-ketodihydrosphingosine reductase (KDSR) to produce dihydrosphingosine (sphinganine). Fungal TSC10 and mammalian KDSR (also named FVT-1) proteins are the enzymes responsible for this process and they belong to the short-chain dehydrogenase/reductase (SDR) superfamily. Albeit that both fungal and mammalian 3-ketodihydrosphingosine reductases were identified more than a decade ago, no structure of these enzymes from any species has been experimentally determined. Here we report the crystal structure of the catalytic domain of TSC10 from Cryptococcus neoformans in complex with NADPH. cnTSC10 adopts a Rossmann fold with a central seven-stranded beta-sheet flanked by alpha-helices on both sides. Several regions are disordered that include the segment connecting the serine and tyrosine residues of the catalytic triad, the so-called 'substrate loop', and the C-terminal region that often participates in homo-tetramerization in other SDRs. In addition, the cofactor NADPH is not fully ordered. These structural features indicate that the catalytic site of cnTSC10 possesses significant flexibility. cnTSC10 is predominantly dimeric in solution while a minor portion of the protein forms homo-tetramer. The crystal structure reveals that the homo-dimer interface involves both hydrophobic and hydrophilic interactions mediated by helices alpha4 and alpha5, as well as the loop connecting strand beta4 and helix alpha4. Because residues forming hydrogen bonds and salt bridges in the dimer interface are not conserved between fungal TSC10 and mammalian KDSR proteins, it might be possible to develop inhibitors that selectively target fungal TSC10 dimerization.

Crystal structure of the 3-ketodihydrosphingosine reductase TSC10 from Cryptococcus neoformans.,Zhao P, Zhuang Z, Guan X, Yang J, Wang W, Kuang Z Biochem Biophys Res Commun. 2023 Aug 30;670:73-78. doi: , 10.1016/j.bbrc.2023.05.109. Epub 2023 May 26. PMID:37285720<ref>PMID:37285720</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8jat" style="background-color:#fffaf0;"></div>
== References ==
<references/>
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</StructureSection>
[[Category: Cryptococcus neoformans var. neoformans JEC21]]
[[Category: Large Structures]]
[[Category: Kuang Z]]
[[Category: Zhao P]]