View source for 8jmr


==Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one==
<StructureSection load='8jmr' size='340' side='right'caption='[[8jmr]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8jmr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Asparagus_officinalis Asparagus officinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8JMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8JMR FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UR0:(1~{E},6~{E})-1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one'>UR0</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8jmr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8jmr OCA], [https://pdbe.org/8jmr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8jmr RCSB], [https://www.ebi.ac.uk/pdbsum/8jmr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8jmr ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A9CQD3_ASPOF A9CQD3_ASPOF] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Hinokiresinol synthase (HRS) from Asparagus officinalis consists of two subunits, alpha and beta, and catalyzes an unusual decarboxylative rearrangement reaction of 4-coumaryl 4-coumarate to generate (Z)-hinokiresinol with complete stereoselectivity. Herein, we describe the mechanism of rearrangement catalysis and the role played by the heterodimeric HRS, through structural and computational analyses. Our results suggest that the HRS reaction is unlikely to proceed via the previously hypothesized Claisen rearrangement mechanism. Instead, we propose that the 4-coumaryl 4-coumarate substrate is first cleaved into coumarate and an extended p-quinone methide, which then recombine to generate a new C-C bond. These processes are facilitated by proton transfers mediated by the basic residues (alpha-Lys164, alpha-Arg169, beta-Lys168, and beta-Arg173) in the cavity at the heterodimer interface. The active site residues, alpha-Asp165, beta-Asp169, beta-Trp17, beta-Met136, and beta-Ala171, play crucial roles in controlling the regioselectivity of the coupling between the fragmented intermediates as well as the stereoselectivity of the decarboxylation step, leading to the formation of the (Z)-hinokiresinol product.

Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.,Ushimaru R, Ding Y, Mori T, Miyamoto K, Uchiyama M, Abe I J Am Chem Soc. 2023 Oct 11;145(40):21966-21973. doi: 10.1021/jacs.3c06762. Epub , 2023 Sep 20. PMID:37729620<ref>PMID:37729620</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8jmr" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Asparagus officinalis]]
[[Category: Large Structures]]
[[Category: Abe I]]
[[Category: Ding Y]]
[[Category: Mori T]]
[[Category: Ushimaru R]]