View source for 8pkj


==Cryo-EM structure of the nucleosome containing Nr5a2 motif at SHL+5.5==
<StructureSection load='8pkj' size='340' side='right'caption='[[8pkj]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8pkj]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PKJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PKJ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pkj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pkj OCA], [https://pdbe.org/8pkj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pkj RCSB], [https://www.ebi.ac.uk/pdbsum/8pkj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pkj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/H33_MOUSE H33_MOUSE] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Gene expression during natural and induced reprogramming is controlled by pioneer transcription factors that initiate transcription from closed chromatin. Nr5a2 is a key pioneer factor that regulates zygotic genome activation in totipotent embryos, pluripotency in embryonic stem cells and metabolism in adult tissues, but the mechanism of its pioneer activity remains poorly understood. Here, we present a cryo-electron microscopy structure of human NR5A2 bound to a nucleosome. The structure shows that the conserved carboxy-terminal extension (CTE) loop of the NR5A2 DNA-binding domain competes with a DNA minor groove anchor of the nucleosome and releases entry-exit site DNA. Mutational analysis showed that NR5A2 D159 of the CTE is dispensable for DNA binding but required for stable nucleosome association and persistent DNA 'unwrapping'. These findings suggest that NR5A2 belongs to an emerging class of pioneer factors that can use DNA minor groove anchor competition to destabilize nucleosomes and facilitate gene expression during reprogramming.

Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition.,Kobayashi W, Sappler AH, Bollschweiler D, Kummecke M, Basquin J, Arslantas EN, Ruangroengkulrith S, Hornberger R, Duderstadt K, Tachibana K Nat Struct Mol Biol. 2024 May;31(5):757-766. doi: 10.1038/s41594-024-01239-0. , Epub 2024 Feb 26. PMID:38409506<ref>PMID:38409506</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8pkj" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Synthetic construct]]
[[Category: Arslantas E]]
[[Category: Basquin J]]
[[Category: Bollschweiler D]]
[[Category: Duderstadt K]]
[[Category: Hornberger R]]
[[Category: Kobayashi W]]
[[Category: Kummecke M]]
[[Category: Ruangroengkulrith S]]
[[Category: Sappler A]]
[[Category: Tachibana K]]