View source for 8s8i


==Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)==
<StructureSection load='8s8i' size='340' side='right'caption='[[8s8i]], [[Resolution|resolution]] 4.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8s8i]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Kluyveromyces_lactis_NRRL_Y-1140 Kluyveromyces lactis NRRL Y-1140]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8S8I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8S8I FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8s8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8s8i OCA], [https://pdbe.org/8s8i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8s8i RCSB], [https://www.ebi.ac.uk/pdbsum/8s8i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8s8i ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RSSA_KLULA RSSA_KLULA] Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
In eukaryotic translation initiation, the 48S preinitiation complex (PIC) scans the 5' untranslated region of mRNAs to search for the cognate start codon (AUG) with assistance from various eukaryotic initiation factors (eIFs). Cognate start codon recognition is precise, rejecting near-cognate codons with a single base difference. However, the structural basis of discrimination of near-cognate start codons was not known. We have captured multiple yeast 48S PICs with a near-cognate AUC codon at the P-site, revealing that the AUC codon induces instability in the codon-anticodon at the P-site, leading to a disordered N-terminal tail of eIF1A. Following eIF1 dissociation, the N-terminal domain of eIF5 fails to occupy the vacant eIF1 position, and eIF2beta becomes flexible. Consequently, 48S with an AUC codon is less favourable for initiation. Furthermore, we observe hitherto unreported metastable states of the eIF2-GTP-Met-tRNAMet ternary complex, where the eIF2beta helix-turn-helix domain may facilitate eIF5 association by preventing eIF1 rebinding to 48S PIC. Finally, a swivelled head conformation of 48S PIC appears crucial for discriminating incorrect and selection of the correct codon-anticodon pair during translation initiation.

Structural basis of AUC codon discrimination during translation initiation in yeast.,Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T Nucleic Acids Res. 2024 Aug 28:gkae737. doi: 10.1093/nar/gkae737. PMID:39193907<ref>PMID:39193907</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8s8i" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Kluyveromyces lactis NRRL Y-1140]]
[[Category: Large Structures]]
[[Category: Hussain T]]
[[Category: Llacer JL]]
[[Category: Sharma P]]
[[Category: Villamayor-Belinchon L]]