View source for 8vb4


==C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle==
<StructureSection load='8vb4' size='340' side='right'caption='[[8vb4]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8vb4]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_phage_PhiM1 Pectobacterium phage PhiM1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8VB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8VB4 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.98&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8vb4 OCA], [https://pdbe.org/8vb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8vb4 RCSB], [https://www.ebi.ac.uk/pdbsum/8vb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8vb4 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A1P7WG10_9CAUD A0A1P7WG10_9CAUD] Forms the portal vertex of the capsid. This portal plays critical roles in head assembly, genome packaging, neck/tail attachment, and genome ejection. The portal protein multimerizes as a single ring-shaped homododecamer arranged around a central channel.[ARBA:ARBA00003421]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Podophages that infect gram-negative bacteria, such as Pectobacterium pathogen PhiM1, encode tail assemblies too short to extend across the complex gram-negative cell wall. To overcome this, podophages encode a large protein complex (ejectosome) packaged inside the viral capsid and correspondingly ejected during infection to form a transient channel that spans the periplasmic space. Here, we describe the ejectosome of bacteriophage PhiM1 to a resolution of 3.32 A by single-particle cryo-electron microscopy (cryo-EM). The core consists of tetrameric and octameric ejection proteins which form a approximately 1.5-MDa ejectosome that must transition through the approximately 30 A aperture created by the short tail nozzle assembly that acts as the conduit for the passage of DNA during infection. The ejectosome forms several grooves into which coils of genomic DNA are fit before the DNA sharply turns and goes down the tunnel and into the portal. In addition, we reconstructed the icosahedral capsid and hybrid tail apparatus to resolutions between 3.04 and 3.23 A, and note an uncommon fold adopted by the dimerized decoration proteins which further emphasize the structural diversity of podophages. These reconstructions have allowed the generation of a complete atomic model of the PhiM1, uncovering two distinct decoration proteins and highlighting the exquisite structural diversity of tailed bacteriophages.

Ejectosome of Pectobacterium bacteriophage PhiM1.,Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M PNAS Nexus. 2024 Sep 19;3(9):pgae416. doi: 10.1093/pnasnexus/pgae416. eCollection , 2024 Sep. PMID:39351541<ref>PMID:39351541</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8vb4" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pectobacterium phage PhiM1]]
[[Category: Eruera A]]
[[Category: Hodgkinson-Bean J]]