View source for 8ze6


==Crystal structure of MjHKU4r-CoV-1 RBD bound to MjDPP4==
<StructureSection load='8ze6' size='340' side='right'caption='[[8ze6]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8ze6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Manis_javanica Manis javanica] and [https://en.wikipedia.org/wiki/Pangolin_coronavirus_HKU4 Pangolin coronavirus HKU4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ZE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ZE6 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ze6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ze6 OCA], [https://pdbe.org/8ze6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ze6 RCSB], [https://www.ebi.ac.uk/pdbsum/8ze6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ze6 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0AAE8ZFM2_9BETC A0AAE8ZFM2_9BETC] Spike protein S1: attaches the virion to the cell membrane by interacting with host receptor, initiating the infection.[HAMAP-Rule:MF_04099]  Spike protein S2': Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]  Spike protein S2: mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Manis javanica]]
[[Category: Pangolin coronavirus HKU4]]
[[Category: Li Z]]
[[Category: Xu Y]]
[[Category: Yang M]]
[[Category: Zhang S]]