View source for 9ezy


==Vibrio cholerae DdmD-DdmE holo complex==
<StructureSection load='9ezy' size='340' side='right'caption='[[9ezy]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9ezy]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9EZY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9EZY FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.56&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ezy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ezy OCA], [https://pdbe.org/9ezy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ezy RCSB], [https://www.ebi.ac.uk/pdbsum/9ezy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ezy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9KR73_VIBCH Q9KR73_VIBCH] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Seventh-pandemic Vibrio cholerae strains contain two pathogenicity islands that encode the DNA defense modules DdmABC and DdmDE. In this study, we used cryogenic electron microscopy to determine the mechanistic basis for plasmid defense by DdmDE. The helicase-nuclease DdmD adopts an autoinhibited dimeric architecture. The prokaryotic Argonaute protein DdmE uses a DNA guide to target plasmid DNA. The structure of the DdmDE complex, validated by in vivo mutational studies, shows that DNA binding by DdmE triggers disassembly of the DdmD dimer and loading of monomeric DdmD onto the nontarget DNA strand. In vitro studies indicate that DdmD translocates in the 5'-to-3' direction, while partially degrading the plasmid DNA. These findings provide critical insights into the mechanism of DdmDE systems in plasmid elimination.

Molecular mechanism of plasmid elimination by the DdmDE defense system.,Loeff L, Adams DW, Chanez C, Stutzmann S, Righi L, Blokesch M, Jinek M Science. 2024 Jul 12;385(6705):188-194. doi: 10.1126/science.adq0534. Epub 2024 , Jun 13. PMID:38870273<ref>PMID:38870273</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 9ezy" style="background-color:#fffaf0;"></div>
== References ==
<references/>
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</StructureSection>
[[Category: Large Structures]]
[[Category: Synthetic construct]]
[[Category: Vibrio cholerae]]
[[Category: Jinek M]]
[[Category: Loeff L]]