View source for 9nug


==D-Ornithine/D-lysine decarboxylase C387A complexed with putrescine, D-arginine and agmatine==
<StructureSection load='9nug' size='340' side='right'caption='[[9nug]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9nug]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9NUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9NUG FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.98&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5DK:(E)-N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-D-ARGININE'>5DK</scene>, <scene name='pdbligand=A1B68:[4-[(~{E})-4-carbamimidamidobutyliminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl+dihydrogen+phosphate'>A1B68</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PUT:1,4-DIAMINOBUTANE'>PUT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9nug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9nug OCA], [https://pdbe.org/9nug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9nug RCSB], [https://www.ebi.ac.uk/pdbsum/9nug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9nug ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DOKDC_SALTY DOKDC_SALTY] Catalyzes the decarboxylation of D-ornithine and D-lysine (PubMed:29024617, PubMed:30699288). Ornithine is likely the physiological substrate (PubMed:29024617). Has no detectable diaminopimelate decarboxylase activity in vitro (PubMed:29024617).<ref>PMID:29024617</ref> <ref>PMID:30699288</ref> 
== References ==
<references/>
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</StructureSection>
[[Category: Large Structures]]
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
[[Category: Blankenship S]]
[[Category: Phillips RS]]