View source for 9nvl


==ATPase Hybrid F1 with the ancestral core domains Binding Dwell==
<StructureSection load='9nvl' size='340' side='right'caption='[[9nvl]], [[Resolution|resolution]] 2.46&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9nvl]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._PS3 Bacillus sp. PS3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9NVL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9NVL FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.46&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9nvl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9nvl OCA], [https://pdbe.org/9nvl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9nvl RCSB], [https://www.ebi.ac.uk/pdbsum/9nvl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9nvl ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A0M4TPJ7_BACP3 A0A0M4TPJ7_BACP3] Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.[HAMAP-Rule:MF_00815][SAAS:SAAS00725627]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Extant F(1)-ATPases exhibit diverse rotational stepping behaviors-3-, 6-, or 9-step cycles-yet the evolutionary origin of these patterns remains unclear. Here, we used ancestral sequence reconstruction to infer the catalytic beta and non-catalytic alpha subunits of a putative ancestral F(1)-ATPase. We then fused their functionally critical domains into the thermostable F(1) from Bacillus PS3, yielding a stable chimeric enzyme. Cryo-EM revealed two distinct conformational states-binding and catalytic dwell states-separated by a ~34 degrees rotation of the gamma subunit, suggesting a fundamental six-step mechanism akin to that of extant six-stepping F(1)-ATPases. Single-molecule rotation assays with ATP and the slowly hydrolyzed ATP analog ATPgammaS demonstrated that the chimeric motor is intrinsically a six-stepper, pausing at binding and catalytic dwell positions separated by 32.1 degrees , although the binding dwell is significantly prolonged by an unknown mechanism. These findings indicate that F(1)-ATPase was originally a six-stepper and diversified into 3-, 6- and 9-step forms in evolutionary adaptation. Based on these results, we discuss plausible features of the entire F(o)F(1) complex, along with potential physiological contexts in the last universal common ancestor and related lineages.

Functional and structural characterization of F(1)-ATPase with common ancestral core domains in stator ring.,Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H Protein Sci. 2025 Nov;34(11):e70345. doi: 10.1002/pro.70345. PMID:41131942<ref>PMID:41131942</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 9nvl" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Bacillus sp. PS3]]
[[Category: Large Structures]]
[[Category: Noji H]]
[[Category: Sobti M]]
[[Category: Stewart AG]]
[[Category: Suzuki AK]]