View source for 9ph0


==Crystal structure of MAR1 from Gelatoporia subvermispora==
<StructureSection load='9ph0' size='340' side='right'caption='[[9ph0]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9ph0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gelatoporia_subvermispora_B Gelatoporia subvermispora B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9PH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9PH0 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ph0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ph0 OCA], [https://pdbe.org/9ph0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ph0 RCSB], [https://www.ebi.ac.uk/pdbsum/9ph0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ph0 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/M2RFP1_CERS8 M2RFP1_CERS8] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
White-rot fungi (WRF) are the most effective lignin-degrading organisms in nature. Lignin is a highly methoxylated plant biopolymer, yet the pathways WRF use to metabolize methoxylated aromatic monomeric compounds as carbon sources remain unidentified. Using systems biology, we elucidate the intracellular catabolism of vanillate-a monomethoxylated aromatic compound-by Gelatoporia subvermispora and Trametes versicolor. We identify and biochemically validate a four-enzyme pathway that converts vanillate into beta-ketoadipate, which enters central carbon metabolism. Unlike bacteria, which demethylate vanillate before ring-cleavage by intradiol dioxygenases, WRF employ oxidative decarboxylation followed by extradiol dioxygenase-mediated cleavage. A previously uncharacterized hydrolase is also shown to catalyze the terminal step of this pathway. Biochemical and structural approaches reveal non-canonical enzymes, including a highly substrate-specific extradiol dioxygenase and a metal-free, promiscuous reductase that acts on both methoxylated and non-methoxylated intermediates. These findings highlight distinct fungal strategies for aromatic degradation, offering insights into lignin valorization and wood decay mechanisms.

Catabolism of lignin-related methoxylated compounds in white-rot fungi utilizes non-canonical oxidoreductases.,Schwartz A, Kuatsjah E, Mathews II, Mitchell HD, Purvine SO, Eder EK, Hoyt DW, Markillie LM, Burnet MC, Woodworth SP, Ingraham MA, Ramirez KJ, Monteiro LMO, Sarangi R, McGeehan JE, Salvachua D Cell Rep. 2026 May 29;45(6):117428. doi: 10.1016/j.celrep.2026.117428. PMID:42217187<ref>PMID:42217187</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 9ph0" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Gelatoporia subvermispora B]]
[[Category: Large Structures]]
[[Category: Kuatsjah E]]
[[Category: Mathews II]]
[[Category: McGeehan JE]]
[[Category: Salvachua D]]
[[Category: Sarangi R]]
[[Category: Schwartz A]]