View source for 9shq


==Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A==
<StructureSection load='9shq' size='340' side='right'caption='[[9shq]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9shq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9SHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9SHQ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9shq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9shq OCA], [https://pdbe.org/9shq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9shq RCSB], [https://www.ebi.ac.uk/pdbsum/9shq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9shq ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PIWL1_MOUSE PIWL1_MOUSE] Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Directly binds methylated piRNAs, a class of 24 to 30 nucleotide RNAs that are generated by a Dicer-independent mechanism and are primarily derived from transposons and other repeated sequence elements. Besides their function in transposable elements repression, piRNAs are probably involved in other processes during meiosis such as translation regulation. Probable component of some RISC complex, which mediates RNA cleavage and translational silencing. Also plays a role in the formation of chromatoid bodies and is required for some miRNAs stability.<ref>PMID:11578866</ref> 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
PIWI-interacting RNAs (piRNAs) guide PIWI endoribonucleases to destroy transposon transcripts, ensuring animal fertility. Here, we report the cryo-electron microscopy structure of the MIWI-pachytene piRNA complex isolated from mouse testes. The piRNA is held via non-specific charge-based interactions with the RNA backbone and by specific recognition of the first nucleotide uridine by residues within the MID and PIWI domains. The first six nucleotides of the guide RNA take up the A-form conformation to facilitate pairing with the target. The RNA channel is wider than that observed in insect PIWI proteins, explaining the tolerance for piRNA seed:target mismatches. The PIWI endonuclease domain is in an inactive "un-plugged" state, with the loop containing a catalytic residue (E671) requiring structural re-orientation for activity. Furthermore, the PIWI domain reveals a conserved pre-formed pocket that may serve to accommodate a conserved tryptophan from the interacting factor GTSF1 to promote small RNA-guided endoribonuclease activity.

Structure of the MIWI endoribonuclease bound to pachytene piRNAs from mouse testes.,Raad N, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS Cell Rep. 2026 Jan 27;45(1):116804. doi: 10.1016/j.celrep.2025.116804. Epub 2026 , Jan 12. PMID:41528842<ref>PMID:41528842</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 9shq" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Burger F]]
[[Category: Fernandez-Rodriguez C]]
[[Category: Homolka D]]
[[Category: Mohammed I]]
[[Category: Pandey RR]]
[[Category: Pillai RS]]
[[Category: Raad NG]]
[[Category: Uchikawa E]]