View source for Alignment of 1rpu vs 1r9f

[[1rpu]] = Carnation italian ringspot virus p19<br>
[[1r9f]] = Tomato bushy stunt virus p19

Sequences in structures obtained from PDBsum and aligned.<br>
Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>
Length=121<br>
Score =  226 bits (576)
Expect = 1e-64
Method: Compositional matrix adjust.<br>
Identities = 106/119 (89%)
Positives = 114/119 (95%)
Gaps = 3/119 (2%)


<small><b><font face = 'courier'>
1rpu  19   ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  75<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;+TSPFKLPDESPSWTEWRL+NDE&nbsp;&nbsp;&nbsp;NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
1r9f  2&nbsp;    MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG  61<br>

1rpu  76   SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL  134<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
1r9f  62   SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM  120<br>
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