190d - Revision history

OCA at 06:26, 7 February 2024

2024-02-07T06:26:13Z

← Older revision		Revision as of 06:26, 7 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=190D FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [https://pdbe.org/190d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [https://www.ebi.ac.uk/pdbsum/190d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=190d ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [https://pdbe.org/190d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [https://www.ebi.ac.uk/pdbsum/190d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=190d ProSAT]</span></td></tr>
	</table>		</table>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	The crystal structure of d(C4) solved at 2.3-A resolution reveals a four-stranded molecule composed of two interdigitated or intercalated duplexes. The duplexes are held together by hemiprotonated cytosine-cytosine base pairs and are parallel stranded, but the two duplexes point in opposite directions. The molecule has a slow right-handed twist of 12.4 degrees between covalently linked cytosine base pairs, and the base stacking distance is 3.1 A. This is in general agreement with the NMR studies. A biological role for DNA in this conformation is suggested.

	~~Crystal structure of a four-stranded intercalated DNA: d(C4).,Chen L, Cai L, Zhang X, Rich A Biochemistry. 1994 Nov 22;33(46):13540-6. PMID:7947764<ref>PMID:7947764</ref>~~

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 190d" style="background-color:#fffaf0;"></div>~~
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 10:44, 24 November 2022

2022-11-24T10:44:57Z

← Older revision		Revision as of 10:44, 24 November 2022
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Cai, L]]		[[Category: Cai L]]
	[[Category: Chen, L]]		[[Category: Chen L]]
	[[Category: Rich, A]]		[[Category: Rich A]]
	[[Category: Zhang, X]]		[[Category: Zhang X]]
	~~[[Category: Base intercalated]]~~
	~~[[Category: Dna]]~~
	~~[[Category: Mismatched]]~~
	~~[[Category: Parallel-stranded tetraplex]]~~
	~~[[Category: Quadruple helix]]~~
	~~[[Category: U-dna~~]]

OCA at 10:14, 17 February 2021

2021-02-17T10:14:41Z

← Older revision		Revision as of 10:14, 17 February 2021
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	<StructureSection load='190d' size='340' side='right'caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='190d' size='340' side='right'caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=190D FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [~~http~~://pdbe.org/190d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/190d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=190d ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [https://pdbe.org/190d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [https://www.ebi.ac.uk/pdbsum/190d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=190d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:24, 10 May 2019

2019-05-10T14:24:55Z

← Older revision		Revision as of 14:24, 10 May 2019
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	==Crystal structure of a four-stranded intercalated DNA: d(C4)==		==Crystal structure of a four-stranded intercalated DNA: d(C4)==
	<StructureSection load='190d' size='340' side='right' caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='190d' size='340' side='right'caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Cai, L]]		[[Category: Cai, L]]
	[[Category: Chen, L]]		[[Category: Chen, L]]

OCA at 09:22, 9 August 2017

2017-08-09T09:22:16Z

← Older revision		Revision as of 09:22, 9 August 2017
Line 1:		Line 1:

	==Crystal structure of a four-stranded intercalated DNA: d(C4)==		==Crystal structure of a four-stranded intercalated DNA: d(C4)==
	<StructureSection load='190d' size='340' side='right' caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='190d' size='340' side='right' caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://pdbe.org/190d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://pdbe.org/190d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=190d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:01, 9 September 2015

2015-09-09T16:01:12Z

← Older revision		Revision as of 16:01, 9 September 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://pdbe.org/190d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 190d" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:11, 22 December 2014

2014-12-22T06:11:04Z

← Older revision		Revision as of 06:11, 22 December 2014
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>		<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Cai, L.]]		[[Category: Cai, L]]
	[[Category: Chen, L.]]		[[Category: Chen, L]]
	[[Category: Rich, A.]]		[[Category: Rich, A]]
	[[Category: Zhang, X.]]		[[Category: Zhang, X]]
	[[Category: Base intercalated]]		[[Category: Base intercalated]]
	[[Category: Dna]]		[[Category: Dna]]

OCA at 05:49, 8 June 2014

2014-06-08T05:49:58Z

← Older revision		Revision as of 05:49, 8 June 2014
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	[[~~Image~~:190d.~~png\|left\|200px~~]]		==Crystal structure of a four-stranded intercalated DNA: d(C4)==
			<StructureSection load='190d' size='340' side='right' caption='[[190d]], [[Resolution\|resolution]] 1.80Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190D FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=190d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=190d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=190d RCSB], [http://www.ebi.ac.uk/pdbsum/190d PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The crystal structure of d(C4) solved at 2.3-A resolution reveals a four-stranded molecule composed of two interdigitated or intercalated duplexes. The duplexes are held together by hemiprotonated cytosine-cytosine base pairs and are parallel stranded, but the two duplexes point in opposite directions. The molecule has a slow right-handed twist of 12.4 degrees between covalently linked cytosine base pairs, and the base stacking distance is 3.1 A. This is in general agreement with the NMR studies. A biological role for DNA in this conformation is suggested.

	~~{{STRUCTURE_190d\| PDB=190d \| SCENE= }}~~		Crystal structure of a four-stranded intercalated DNA: d(C4).,Chen L, Cai L, Zhang X, Rich A Biochemistry. 1994 Nov 22;33(46):13540-6. PMID:7947764<ref>PMID:7947764</ref>

	~~===Crystal structure~~ of ~~a four-stranded intercalated DNA: d(C4)===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_7947764}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[190d]] is a 8 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=190D OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:007947764<~~/~~ref~~><~~ref group="xtra">PMID:016204453</ref><references group="xtra"~~/>
	[[Category: Cai, L.]]		[[Category: Cai, L.]]
	[[Category: Chen, L.]]		[[Category: Chen, L.]]

OCA: Protected "190d" [edit=sysop:move=sysop]

2012-08-14T18:00:47Z

Protected "190d" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:00, 14 August 2012
(No difference)

OCA at 18:00, 14 August 2012

2012-08-14T18:00:45Z

← Older revision		Revision as of 18:00, 14 August 2012
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	~~{{Seed}}~~
	[[Image:190d.png\|left\|200px]]		[[Image:190d.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_190d", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_190d\| PDB=190d \| SCENE= }}		{{STRUCTURE_190d\| PDB=190d \| SCENE= }}

	===~~CRYSTAL STRUCTURE OF A FOUR~~-~~STRANDED INTERCALATED~~ DNA: D(C4)===		===Crystal structure of a four-stranded intercalated DNA: d(C4)===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_7947764}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 7947764 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_7947764}}		{{ABSTRACT_PUBMED_7947764}}

	==About this Structure==		==About this Structure==
	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA].		[[190d]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=190D OCA].

	==Reference==		==Reference==
	~~Crystal structure of a four-stranded intercalated DNA~~: ~~d(C4)., Chen L, Cai L, Zhang X, Rich A, Biochemistry. 1994 Nov 22;33(46):13540-6.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~7947764 7947764]~~		<ref group="xtra">PMID:007947764</ref><ref group="xtra">PMID:016204453</ref><references group="xtra"/>
	[[Category: Cai, L.]]		[[Category: Cai, L.]]
	[[Category: Chen, L.]]		[[Category: Chen, L.]]
Line 29:		Line 17:
	[[Category: Zhang, X.]]		[[Category: Zhang, X.]]
	[[Category: Base intercalated]]		[[Category: Base intercalated]]
			[[Category: Dna]]
	[[Category: Mismatched]]		[[Category: Mismatched]]
	[[Category: Parallel-stranded tetraplex]]		[[Category: Parallel-stranded tetraplex]]
	[[Category: Quadruple helix]]		[[Category: Quadruple helix]]
	[[Category: U-dna]]		[[Category: U-dna]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 15:39:12 2008''~~