1dfd - Revision history

OCA at 05:42, 13 August 2026

2026-08-13T05:42:46Z

← Older revision		Revision as of 05:42, 13 August 2026
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfocurvibacter_africanus Desulfocurvibacter africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfocurvibacter_africanus Desulfocurvibacter africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, models</td></tr>
	~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [https://pdbe.org/1dfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [https://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [https://pdbe.org/1dfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [https://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>
	</table>		</table>
Line 15:		Line 14:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/1dfd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/1dfd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 08:23, 22 May 2024

2024-05-22T08:23:59Z

← Older revision		Revision as of 08:23, 22 May 2024
Line 20:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dfd ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dfd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The solution structure of the 64 amino acid Fe4S4 ferredoxin I from Desulfovibrio africanus has been determined using two-dimensional 1H NMR spectroscopy. Sequence-specific assignments were obtained for 59 amino acid residues and the structure determined with the program DIANA on the basis of 549 nuclear Overhauser enhancement (NOE) upper distance limits, and four dihedral angle and 52 distance constraints for the Fe4S4 cluster. The NMR structure was refined using the simulated annealing and energy minimisation protocols of the program X-PLOR to yield a final family of 19 structures selected on the basis of good covalent geometry and minimal restraint violations. The r.m.s.d. values to the average structure for this family are 0.49(+/-0.07) A and 0.94(+/-0.09) A for the backbone and heavy-atoms of residues 3 to 62, respectively.The NMR structure has been compared to the previously reported X-ray structures for the two molecules within the asymmetric unit of the crystal, which have a network of seven hydrogen bonds between them. This intermolecular interface, involving residues 38, 40 to 43 and 46, has the same conformation in the solution structures showing that the crystal packing does not perturb the structure. There are three regions in which the NMR and X-ray structures differ: around the cluster, a turn involving residues 8 to 10, and a loop involving residues 29 to 32. In the family of solution structures the backbone of the loop region incorporating residues 29 to 32 is well-defined whilst in both of the X-ray molecules it is ill-defined. The small differences between the X-ray and NMR structures for the cluster environment and the turn between residues 8 to 10 probably reflects a lack of NMR constraints. The observation of relatively rapid amide NH hydrogen exchange of NH groups close to the cluster, together with rapid flipping for Phe25, which is also close to the cluster, indicates that the cluster environment is more dynamic than the corresponding regions of related Fe/S proteins.

			Determination of the structure of oxidised Desulfovibrio africanus ferredoxin I by 1H NMR spectroscopy and comparison of its solution structure with its crystal structure.,Davy SL, Osborne MJ, Moore GR J Mol Biol. 1998 Apr 3;277(3):683-706. PMID:9533888<ref>PMID:9533888</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]		*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:50, 20 March 2024

2024-03-20T09:50:06Z

← Older revision		Revision as of 09:50, 20 March 2024
Line 1:		Line 1:

	==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==		==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==
	<StructureSection load='1dfd' size='340' side='right'caption='[[1dfd~~]], [[NMR_Ensembles_of_Models \| 19 NMR models~~]]' scene=''>		<StructureSection load='1dfd' size='340' side='right'caption='[[1dfd]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Desulfovibrio_africanus Desulfovibrio~~ africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfocurvibacter_africanus Desulfocurvibacter africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [https://pdbe.org/1dfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [https://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [https://pdbe.org/1dfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [https://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.		[https://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dfd ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dfd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	The solution structure of the 64 amino acid Fe4S4 ferredoxin I from Desulfovibrio africanus has been determined using two-dimensional 1H NMR spectroscopy. Sequence-specific assignments were obtained for 59 amino acid residues and the structure determined with the program DIANA on the basis of 549 nuclear Overhauser enhancement (NOE) upper distance limits, and four dihedral angle and 52 distance constraints for the Fe4S4 cluster. The NMR structure was refined using the simulated annealing and energy minimisation protocols of the program X-PLOR to yield a final family of 19 structures selected on the basis of good covalent geometry and minimal restraint violations. The r.m.s.d. values to the average structure for this family are 0.49(+/-0.07) A and 0.94(+/-0.09) A for the backbone and heavy-atoms of residues 3 to 62, respectively.The NMR structure has been compared to the previously reported X-ray structures for the two molecules within the asymmetric unit of the crystal, which have a network of seven hydrogen bonds between them. This intermolecular interface, involving residues 38, 40 to 43 and 46, has the same conformation in the solution structures showing that the crystal packing does not perturb the structure. There are three regions in which the NMR and X-ray structures differ: around the cluster, a turn involving residues 8 to 10, and a loop involving residues 29 to 32. In the family of solution structures the backbone of the loop region incorporating residues 29 to 32 is well-defined whilst in both of the X-ray molecules it is ill-defined. The small differences between the X-ray and NMR structures for the cluster environment and the turn between residues 8 to 10 probably reflects a lack of NMR constraints. The observation of relatively rapid amide NH hydrogen exchange of NH groups close to the cluster, together with rapid flipping for Phe25, which is also close to the cluster, indicates that the cluster environment is more dynamic than the corresponding regions of related Fe/S proteins.

	Determination of the structure of oxidised Desulfovibrio africanus ferredoxin I by 1H NMR spectroscopy and comparison of its solution structure with its crystal structure.,Davy SL, Osborne MJ, Moore GR J Mol Biol. 1998 Apr 3;277(3):683-706. PMID:9533888<ref>PMID:9533888</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>~~

	==See Also==		==See Also==
	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]		*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Desulfovibrio~~ africanus]]		[[Category: Desulfocurvibacter africanus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Davy~~, S L~~]]		[[Category: Davy SL]]
	[[Category: Moore~~, G R~~]]		[[Category: Moore GR]]
	[[Category: Osborne~~, M J]]~~		[[Category: Osborne MJ]]
	~~[[Category: 4fe-4s cluster]]~~
	~~[[Category: Electron transport]]~~
	~~[[Category: Electron-transfer protein]]~~
	~~[[Category: Oxidised desulfovibrio africanus ferredoxin i~~]]

OCA at 10:46, 14 July 2021

2021-07-14T10:46:13Z

← Older revision		Revision as of 10:46, 14 July 2021
Line 3:		Line 3:
	<StructureSection load='1dfd' size='340' side='right'caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='1dfd' size='340' side='right'caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [~~http~~://pdbe.org/1dfd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [https://pdbe.org/1dfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [https://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.		[[https://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:34, 10 October 2019

2019-10-10T06:34:56Z

← Older revision		Revision as of 06:34, 10 October 2019
Line 1:		Line 1:

	==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==		==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==
	<StructureSection load='1dfd' size='340' side='right' caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='1dfd' size='340' side='right'caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio africanus]]		[[Category: Desulfovibrio africanus]]
			[[Category: Large Structures]]
	[[Category: Davy, S L]]		[[Category: Davy, S L]]
	[[Category: Moore, G R]]		[[Category: Moore, G R]]

OCA at 08:17, 6 December 2017

2017-12-06T08:17:39Z

← Older revision		Revision as of 08:17, 6 December 2017
Line 1:		Line 1:

	==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==		==OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, 19 STRUCTURES==
	<StructureSection load='1dfd' size='340' side='right' caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='1dfd' size='340' side='right' caption='[[1dfd]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://pdbe.org/1dfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://pdbe.org/1dfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dfd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/1dfd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/1dfd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>

	~~==See Also==~~
	*[[Ferredoxin\|Ferredoxin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:16, 10 February 2016

2016-02-10T07:16:50Z

← Older revision		Revision as of 07:16, 10 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dfd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:36, 11 September 2015

2015-09-11T06:36:45Z

← Older revision		Revision as of 06:36, 11 September 2015
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	<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_africanus Desulfovibrio africanus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DFD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://pdbe.org/1dfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 1dfd" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 12:40, 25 December 2014

2014-12-25T12:40:35Z

← Older revision		Revision as of 12:40, 25 December 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dfd RCSB], [http://www.ebi.ac.uk/pdbsum/1dfd PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/FER1_DESAF FER1_DESAF]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 20:54, 22 December 2014

2014-12-22T20:54:18Z

← Older revision		Revision as of 20:54, 22 December 2014
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	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio africanus]]		[[Category: Desulfovibrio africanus]]
	[[Category: Davy, S L.]]		[[Category: Davy, S L]]
	[[Category: Moore, G R.]]		[[Category: Moore, G R]]
	[[Category: Osborne, M J.]]		[[Category: Osborne, M J]]
	[[Category: 4fe-4s cluster]]		[[Category: 4fe-4s cluster]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Electron-transfer protein]]		[[Category: Electron-transfer protein]]
	[[Category: Oxidised desulfovibrio africanus ferredoxin i]]		[[Category: Oxidised desulfovibrio africanus ferredoxin i]]