1ji8 - Revision history

OCA at 06:49, 30 October 2024

2024-10-30T06:49:52Z

← Older revision		Revision as of 06:49, 30 October 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [https://pdbe.org/1ji8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [https://pdbe.org/1ji8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji8_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji8 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The solution structure of DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase, has been determined by NMR spectroscopy. This 12.7-kDa protein from the hyperthermophilic archaeon Pyrobaculum aerophilum adopts a novel fold consisting of an orthogonal helical bundle with a beta hairpin along one side. A portion of the structure resembles the helix-turn-helix DNA-binding motif common in transcriptional regulator proteins. The protein contains two disulfide bonds but remains folded following reduction of the disulfides. DsrC proteins from organisms other than Pyrobaculum species do not contain these disulfide bonds. A conserved cysteine next to the C-terminus, which is not involved in the disulfide bonds, is located on a seven-residue C-terminal arm that is not part of the globular protein and is likely to dynamically sample more than one conformation.

			Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase.,Cort JR, Mariappan SV, Kim CY, Park MS, Peat TS, Waldo GS, Terwilliger TC, Kennedy MA Eur J Biochem. 2001 Nov;268(22):5842-50. PMID:11722571<ref>PMID:11722571</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 1ji8" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:52, 3 April 2024

2024-04-03T07:52:31Z

← Older revision		Revision as of 07:52, 3 April 2024
Line 1:		Line 1:

	==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==		==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==
	<StructureSection load='1ji8' size='340' side='right'caption='[[1ji8~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>		<StructureSection load='1ji8' size='340' side='right'caption='[[1ji8]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_51768 Atcc 51768~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>dsrC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~13773 ATCC 51768])~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [https://pdbe.org/1ji8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [https://pdbe.org/1ji8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q8ZUX1_PYRAE Q8ZUX1_PYRAE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji8 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	The solution structure of DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase, has been determined by NMR spectroscopy. This 12.7-kDa protein from the hyperthermophilic archaeon Pyrobaculum aerophilum adopts a novel fold consisting of an orthogonal helical bundle with a beta hairpin along one side. A portion of the structure resembles the helix-turn-helix DNA-binding motif common in transcriptional regulator proteins. The protein contains two disulfide bonds but remains folded following reduction of the disulfides. DsrC proteins from organisms other than Pyrobaculum species do not contain these disulfide bonds. A conserved cysteine next to the C-terminus, which is not involved in the disulfide bonds, is located on a seven-residue C-terminal arm that is not part of the globular protein and is likely to dynamically sample more than one conformation.

	Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase.,Cort JR, Mariappan SV, Kim CY, Park MS, Peat TS, Waldo GS, Terwilliger TC, Kennedy MA Eur J Biochem. 2001 Nov;268(22):5842-50. PMID:11722571<ref>PMID:11722571</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 1ji8" style="background-color:#fffaf0;"></div>~~
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Atcc 51768]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Cort, J R~~]]		[[Category: Pyrobaculum aerophilum]]
	[[Category: ~~Kennedy, M A~~]]		[[Category: Cort JR]]
	[[Category: ~~Structural genomic]]~~		[[Category: Kennedy MA]]
	~~[[Category: Nesg]]~~
	~~[[Category: Orthogonal helical bundle]]~~
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: PSI, Protein structure initiative~~]]

OCA at 08:03, 23 February 2022

2022-02-23T08:03:49Z

← Older revision		Revision as of 08:03, 23 February 2022
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	<StructureSection load='1ji8' size='340' side='right'caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ji8' size='340' side='right'caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [~~http~~://pdbe.org/1ji8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [https://pdbe.org/1ji8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:31, 25 November 2020

2020-11-25T07:31:57Z

← Older revision		Revision as of 07:31, 25 November 2020
Line 1:		Line 1:

	==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==		==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==
	<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ji8' size='340' side='right'caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://pdbe.org/1ji8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://pdbe.org/1ji8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 51768]]		[[Category: Atcc 51768]]
			[[Category: Large Structures]]
	[[Category: Cort, J R]]		[[Category: Cort, J R]]
	[[Category: Kennedy, M A]]		[[Category: Kennedy, M A]]

OCA at 09:13, 17 January 2018

2018-01-17T09:13:20Z

← Older revision		Revision as of 09:13, 17 January 2018
Line 1:		Line 1:

	==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==		==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==
	<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://pdbe.org/1ji8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://pdbe.org/1ji8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji8 ProSAT], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji8_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:26, 8 February 2016

2016-02-08T08:26:01Z

← Older revision		Revision as of 08:26, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:42, 10 September 2015

2015-09-10T09:42:06Z

← Older revision		Revision as of 09:42, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrobaculum_aerophilum Pyrobaculum aerophilum~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ~~Pyrobaculum aerophilum~~])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 ATCC 51768])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://pdbe.org/1ji8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 1ji8" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Pyrobaculum aerophilum~~]]		[[Category: Atcc 51768]]
	[[Category: Cort, J R]]		[[Category: Cort, J R]]
	[[Category: Kennedy, M A]]		[[Category: Kennedy, M A]]

OCA at 12:17, 2 January 2015

2015-01-02T12:17:59Z

← Older revision		Revision as of 12:17, 2 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 Pyrobaculum aerophilum])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 Pyrobaculum aerophilum])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Pyrobaculum aerophilum]]		[[Category: Pyrobaculum aerophilum]]
	[[Category: Cort, J R.]]		[[Category: Cort, J R]]
	[[Category: Kennedy, M A.]]		[[Category: Kennedy, M A]]
	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]		[[Category: Structural genomic]]
	[[Category: Nesg]]		[[Category: Nesg]]
	~~[[Category: Northeast structural genomics consortium]]~~
	[[Category: Orthogonal helical bundle]]		[[Category: Orthogonal helical bundle]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	~~[[Category: Psi]]~~
	~~[[Category: Structural genomic~~]]

OCA at 14:32, 28 September 2014

2014-09-28T14:32:14Z

← Older revision		Revision as of 14:32, 28 September 2014
Line 1:		Line 1:
	[[Image:~~1ji8~~.~~png~~\|~~left~~\|~~200px~~]]		==Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase==
			<StructureSection load='1ji8' size='340' side='right' caption='[[1ji8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[1ji8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JI8 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13773 Pyrobaculum aerophilum])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ji8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ji8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ji8 PDBsum], [http://www.topsan.org/Proteins/NESGC/1ji8 TOPSAN]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji8_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The solution structure of DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase, has been determined by NMR spectroscopy. This 12.7-kDa protein from the hyperthermophilic archaeon Pyrobaculum aerophilum adopts a novel fold consisting of an orthogonal helical bundle with a beta hairpin along one side. A portion of the structure resembles the helix-turn-helix DNA-binding motif common in transcriptional regulator proteins. The protein contains two disulfide bonds but remains folded following reduction of the disulfides. DsrC proteins from organisms other than Pyrobaculum species do not contain these disulfide bonds. A conserved cysteine next to the C-terminus, which is not involved in the disulfide bonds, is located on a seven-residue C-terminal arm that is not part of the globular protein and is likely to dynamically sample more than one conformation.

	~~{{STRUCTURE_1ji8\| PDB=1ji8 \| SCENE= }}~~		Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase.,Cort JR, Mariappan SV, Kim CY, Park MS, Peat TS, Waldo GS, Terwilliger TC, Kennedy MA Eur J Biochem. 2001 Nov;268(22):5842-50. PMID:11722571<ref>PMID:11722571</ref>

	~~===Solution Structure of Pyrobaculum Aerophilum DsrC~~/~~gamma subunit~~ of ~~dissimilatory sulfite reductase===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_11722571}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[1ji8]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1JI8 OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:011722571<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Pyrobaculum aerophilum]]		[[Category: Pyrobaculum aerophilum]]
	[[Category: Cort, J R.]]		[[Category: Cort, J R.]]

OCA: Protected "1ji8" [edit=sysop:move=sysop]

2012-12-05T11:27:57Z

Protected "1ji8" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:27, 5 December 2012
(No difference)