1jiu - Revision history

OCA at 08:41, 16 August 2023

2023-08-16T08:41:27Z

← Older revision		Revision as of 08:41, 16 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [https://pdbe.org/1jiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [https://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [https://pdbe.org/1jiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [https://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:01, 18 January 2023

2023-01-18T08:01:55Z

← Older revision		Revision as of 08:01, 18 January 2023
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	<StructureSection load='1jiu' size='340' side='right'caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1jiu' size='340' side='right'caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpt4 Bpt4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [https://pdbe.org/1jiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [https://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [https://pdbe.org/1jiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [https://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4]] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.		[https://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bpt4]]~~		[[Category: Escherichia virus T4]]
	~~[[Category: DNA beta-glucosyltransferase~~]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Aschke-Sonnenborn, U]]		[[Category: Aschke-Sonnenborn U]]
	[[Category: Freemont~~, P S~~]]		[[Category: Freemont PS]]
	[[Category: Janin, J]]		[[Category: Janin J]]
	[[Category: Kurzeck, J]]		[[Category: Kurzeck J]]
	[[Category: Lariviere, L]]		[[Category: Lariviere L]]
	[[Category: Morera, S]]		[[Category: Morera S]]
	[[Category: Ruger, W]]		[[Category: Ruger W]]
	~~[[Category: Glycosyltransferase]]~~
	~~[[Category: Transferase~~]]

OCA at 07:19, 14 April 2021

2021-04-14T07:19:27Z

← Older revision		Revision as of 07:19, 14 April 2021
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	<StructureSection load='1jiu' size='340' side='right'caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1jiu' size='340' side='right'caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [~~http~~://pdbe.org/1jiu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [https://pdbe.org/1jiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [https://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4]] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.		[[https://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4]] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 07:03, 10 July 2019

2019-07-10T07:03:35Z

← Older revision		Revision as of 07:03, 10 July 2019
Line 1:		Line 1:

	==T4 Phage BGT in Complex with Mg2+ : Form I==		==T4 Phage BGT in Complex with Mg2+ : Form I==
	<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1jiu' size='340' side='right'caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
Line 26:		Line 26:
	[[Category: Bpt4]]		[[Category: Bpt4]]
	[[Category: DNA beta-glucosyltransferase]]		[[Category: DNA beta-glucosyltransferase]]
			[[Category: Large Structures]]
	[[Category: Aschke-Sonnenborn, U]]		[[Category: Aschke-Sonnenborn, U]]
	[[Category: Freemont, P S]]		[[Category: Freemont, P S]]

OCA at 09:55, 4 October 2017

2017-10-04T09:55:14Z

← Older revision		Revision as of 09:55, 4 October 2017
Line 1:		Line 1:

	==T4 Phage BGT in Complex with Mg2+ : Form I==		==T4 Phage BGT in Complex with Mg2+ : Form I==
	<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://pdbe.org/1jiu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://pdbe.org/1jiu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jiu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 23:50, 11 September 2015

2015-09-11T23:50:22Z

← Older revision		Revision as of 23:50, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_t4 Enterobacteria phage t4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://pdbe.org/1jiu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 1jiu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Bpt4]]
	[[Category: DNA beta-glucosyltransferase]]		[[Category: DNA beta-glucosyltransferase]]
	~~[[Category: Enterobacteria phage t4]]~~
	[[Category: Aschke-Sonnenborn, U]]		[[Category: Aschke-Sonnenborn, U]]
	[[Category: Freemont, P S]]		[[Category: Freemont, P S]]

OCA at 21:02, 25 December 2014

2014-12-25T21:02:34Z

← Older revision		Revision as of 21:02, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/GSTB_BPT4 GSTB_BPT4]] Catalyzes the transfer of glucose (Glc) from uridine diphosphoglucose (UDP-Glc) to 5-hydroxymethylcytosine (5-HMC) in double-stranded DNA. Is involved in a DNA modification process to protect the phage genome against its own nucleases and the host restriction endonuclease system.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 05:16, 22 December 2014

2014-12-22T05:16:39Z

← Older revision		Revision as of 05:16, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	[[Category: DNA beta-glucosyltransferase]]		[[Category: DNA beta-glucosyltransferase]]
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]
	[[Category: Aschke-Sonnenborn, U.]]		[[Category: Aschke-Sonnenborn, U]]
	[[Category: Freemont, P S.]]		[[Category: Freemont, P S]]
	[[Category: Janin, J.]]		[[Category: Janin, J]]
	[[Category: Kurzeck, J.]]		[[Category: Kurzeck, J]]
	[[Category: Lariviere, L.]]		[[Category: Lariviere, L]]
	[[Category: Morera, S.]]		[[Category: Morera, S]]
	[[Category: Ruger, W.]]		[[Category: Ruger, W]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:50, 8 June 2014

2014-06-08T05:50:05Z

← Older revision		Revision as of 05:50, 8 June 2014
Line 1:		Line 1:
	[[~~Image~~:~~1jiu~~.~~png~~\|~~left~~\|~~200px~~]]		==T4 Phage BGT in Complex with Mg2+ : Form I==
			<StructureSection load='1jiu' size='340' side='right' caption='[[1jiu]], [[Resolution\|resolution]] 2.50Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[1jiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JIU FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bgt\|1bgt]], [[1bgu\|1bgu]], [[1c3j\|1c3j]], [[1qkj\|1qkj]], [[1jiv\|1jiv]], [[1jix\|1jix]]</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_beta-glucosyltransferase DNA beta-glucosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.27 2.4.1.27] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jiu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jiu RCSB], [http://www.ebi.ac.uk/pdbsum/1jiu PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			beta-Glucosyltransferase (BGT) is a DNA-modifying enzyme encoded by bacteriophage T4 that transfers glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA. We report six X-ray structures of the substrate-free and the UDP-bound enzyme. Four also contain metal ions which activate the enzyme, including Mg(2+) in forms 1 and 2 and Mn(2+) or Ca(2+). The substrate-free BGT structure differs by a domain movement from one previously determined in another space group. Further domain movements are seen in the complex with UDP and the four UDP-metal complexes. Mg(2+), Mn(2+) and Ca(2+) bind near the beta-phosphate of the nucleotide, but they occupy slightly different positions and have different ligands depending on the metal and the crystal form. Whilst the metal site observed in these complexes with the product UDP is not compatible with a role in activating glucose transfer, it approximates the position of the positive charge in the oxocarbonium ion thought to form on the glucose moiety of the substrate during catalysis.

	~~{{STRUCTURE_1jiu\| PDB=1jiu \| SCENE= }}~~		High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding.,Morera S, Lariviere L, Kurzeck J, Aschke-Sonnenborn U, Freemont PS, Janin J, Ruger W J Mol Biol. 2001 Aug 17;311(3):569-77. PMID:11493010<ref>PMID:11493010</ref>

	~~===T4 Phage BGT in Complex with Mg2+ : Form I===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_11493010}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[1jiu]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1JIU OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:011493010<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: DNA beta-glucosyltransferase]]		[[Category: DNA beta-glucosyltransferase]]
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]

OCA: Protected "1jiu" [edit=sysop:move=sysop]

2012-08-14T15:23:21Z

Protected "1jiu" [edit=sysop:move=sysop]

← Older revision	Revision as of 15:23, 14 August 2012
(No difference)