1obj - Revision history

OCA at 12:34, 13 December 2023

2023-12-13T12:34:01Z

← Older revision		Revision as of 12:34, 13 December 2023
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	<StructureSection load='1obj' size='340' side='right'caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1obj' size='340' side='right'caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium~~ japonicum~~" kirchner 1896~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1gr8\|1gr8]]~~, [[~~1gr9~~\|~~1gr9~~]]~~, [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</div>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [https://pdbe.org/1obj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [https://www.ebi.ac.uk/pdbsum/1obj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [https://pdbe.org/1obj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [https://www.ebi.ac.uk/pdbsum/1obj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obj ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q9ZIV5_BRAJP Q9ZIV5_BRAJP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Rhizobacterium~~ japonicum ~~kirchner 1896~~]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Oh, B H]]		[[Category: Oh B-H]]
	[[Category: Shin, S]]		[[Category: Shin S]]
	~~[[Category: Amidase~~]]

OCA at 09:56, 12 May 2021

2021-05-12T09:56:48Z

← Older revision		Revision as of 09:56, 12 May 2021
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	<StructureSection load='1obj' size='340' side='right'caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1obj' size='340' side='right'caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [~~http~~://pdbe.org/1obj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1obj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1obj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [https://pdbe.org/1obj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [https://www.ebi.ac.uk/pdbsum/1obj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:59, 7 August 2019

2019-08-07T06:59:11Z

← Older revision		Revision as of 06:59, 7 August 2019
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	==Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum==		==Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum==
	<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1obj' size='340' side='right'caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obj_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</StructureSection>		</StructureSection>
	[[Category: Rhizobacterium japonicum kirchner 1896]]		[[Category: Rhizobacterium japonicum kirchner 1896]]
			[[Category: Large Structures]]
	[[Category: Oh, B H]]		[[Category: Oh, B H]]
	[[Category: Shin, S]]		[[Category: Shin, S]]
	[[Category: Amidase]]		[[Category: Amidase]]

OCA at 09:43, 1 November 2017

2017-11-01T09:43:51Z

← Older revision		Revision as of 09:43, 1 November 2017
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	==~~CRYSTAL STRUCTURE OF THE~~ T150A ~~MUTANT OF MALONAMIDASE~~ E2 ~~FROM BRADYRHIZOBIUM JAPONICUM~~==
			==Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum==
	<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://pdbe.org/1obj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://pdbe.org/1obj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1obj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1obj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:52, 11 September 2015

2015-09-11T16:52:35Z

← Older revision		Revision as of 16:52, 11 September 2015
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	<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bradyrhizobium_japonicum Bradyrhizobium~~ japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://pdbe.org/1obj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 1obj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bradyrhizobium~~ japonicum]]		[[Category: Rhizobacterium japonicum kirchner 1896]]
	[[Category: Oh, B H]]		[[Category: Oh, B H]]
	[[Category: Shin, S]]		[[Category: Shin, S]]
	[[Category: Amidase]]		[[Category: Amidase]]

OCA at 15:49, 5 January 2015

2015-01-05T15:49:02Z

← Older revision		Revision as of 15:49, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Oh, B H.]]		[[Category: Oh, B H]]
	[[Category: Shin, S.]]		[[Category: Shin, S]]
	[[Category: Amidase]]		[[Category: Amidase]]

OCA at 13:20, 28 September 2014

2014-09-28T13:20:31Z

← Older revision		Revision as of 13:20, 28 September 2014
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	[[Image:~~1obj~~.~~png~~\|~~left~~\|~~200px~~]]		==CRYSTAL STRUCTURE OF THE T150A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM==
			<StructureSection load='1obj' size='340' side='right' caption='[[1obj]], [[Resolution\|resolution]] 1.90Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBJ FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gr8\|1gr8]], [[1gr9\|1gr9]], [[1grk\|1grk]], [[1o9n\|1o9n]], [[1o9o\|1o9o]], [[1o9p\|1o9p]], [[1o9q\|1o9q]], [[1obi\|1obi]], [[1obk\|1obk]], [[1obl\|1obl]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obj RCSB], [http://www.ebi.ac.uk/pdbsum/1obj PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obj_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Amidase signature family enzymes, which are widespread in nature, contain a newly identified Ser-cisSer-Lys catalytic triad in which the peptide bond between Ser131 and the preceding residue Gly130 is in a cis configuration. In order to characterize the property of the novel triad, we have determined the structures of five mutant malonamidase E2 enzymes that contain a Cys-cisSer-Lys, Ser-cisAla-Lys, or Ser-cisSer-Ala triad or a substitution of Gly130 with alanine. Cysteine cannot replace the role of Ser155 due to a hyper-reactivity of the residue, which results in the modification of the cysteine to cysteinyl sulfinic acid, most likely inside the expression host cells. The lysine residue plays a structural as well as a catalytic role, since the substitution of the residue with alanine disrupts the active site structure completely. The two observations are in sharp contrast with the consequences of the corresponding substitutions in the classical Ser-His-Asp triad. Structural data on the mutant containing the Ser-cisAla-Lys triad convincingly suggest that Ser131 plays an analogous catalytic role as the histidine of the Ser-His-Asp triad. The unusual cis configuration of Ser131 appears essential for the precise contacts of this residue with the other triad residues, as indicated by the near invariance of the preceding glycine residue (Gly130), structural data on the G130A mutant, and by a modeling experiment. The data provide a deep understanding of the role of each residue of the new triad at the atomic level and demonstrate that the new triad is a catalytic device distinctively different from the classical triad or its variants.

	~~{{STRUCTURE_1obj\| PDB=1obj \| SCENE= }}~~		Characterization of a novel Ser-cisSer-Lys catalytic triad in comparison with the classical Ser-His-Asp triad.,Shin S, Yun YS, Koo HM, Kim YS, Choi KY, Oh BH J Biol Chem. 2003 Jul 4;278(27):24937-43. Epub 2003 Apr 23. PMID:12711609<ref>PMID:12711609</ref>

	~~===CRYSTAL STRUCTURE OF THE T150A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_12711609}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[1obj]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:012711609<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Oh, B H.]]		[[Category: Oh, B H.]]
	[[Category: Shin, S.]]		[[Category: Shin, S.]]
	[[Category: Amidase]]		[[Category: Amidase]]

OCA: Protected "1obj" [edit=sysop:move=sysop]

2012-12-12T21:39:36Z

Protected "1obj" [edit=sysop:move=sysop]

← Older revision	Revision as of 21:39, 12 December 2012
(No difference)

OCA at 21:39, 12 December 2012

2012-12-12T21:39:34Z

← Older revision		Revision as of 21:39, 12 December 2012
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	~~{{Seed}}~~
	[[Image:1obj.png\|left\|200px]]		[[Image:1obj.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_1obj", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_1obj\| PDB=1obj \| SCENE= }}		{{STRUCTURE_1obj\| PDB=1obj \| SCENE= }}

	===CRYSTAL STRUCTURE OF THE T150A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM===		===CRYSTAL STRUCTURE OF THE T150A MUTANT OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_12711609}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 12711609 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_12711609}}		{{ABSTRACT_PUBMED_12711609}}

	==About this Structure==		==About this Structure==
	~~1OBJ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA].		[[1obj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~12711609~~</ref><references group="xtra"/>		<ref group="xtra">PMID:012711609</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Oh, B H.]]		[[Category: Oh, B H.]]
	[[Category: Shin, S.]]		[[Category: Shin, S.]]
	[[Category: Amidase]]		[[Category: Amidase]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:12:01 2009''~~

OCA at 02:12, 18 February 2009

2009-02-18T02:12:04Z

← Older revision		Revision as of 02:12, 18 February 2009
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	==About this Structure==		==About this Structure==
	1OBJ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA].		1OBJ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBJ OCA].

	==Reference==		==Reference==
	Characterization of a novel Ser-cisSer-Lys catalytic triad in comparison with the classical Ser-His-Asp triad., Shin S, Yun YS, Koo HM, Kim YS, Choi KY, Oh BH, J Biol Chem. 2003 Jul 4;278(27):24937-43. Epub 2003 Apr 23. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12711609 12711609]~~		<ref group="xtra">PMID:12711609</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	~~[[Category: Single protein]]~~
	[[Category: Oh, B H.]]		[[Category: Oh, B H.]]
	[[Category: Shin, S.]]		[[Category: Shin, S.]]
	[[Category: Amidase]]		[[Category: Amidase]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 10~~:40:~~31 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:12:01 2009''