1rmy - Revision history

OCA at 06:06, 23 August 2023

2023-08-23T06:06:28Z

← Older revision		Revision as of 06:06, 23 August 2023
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	<StructureSection load='1rmy' size='340' side='right'caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1rmy' size='340' side='right'caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1RMY FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RMY FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=DCZ:2~~-~~DEOXYCYTIDINE'>DCZ</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em~~;~~'>[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</div>~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])~~<~~/td~~></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [https://pdbe.org/1rmy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [https://www.ebi.ac.uk/pdbsum/1rmy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmy ProSAT]</span></td></tr>
	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2]~~ </~~span~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [~~http~~://pdbe.org/1rmy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1rmy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI]] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>		[https://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bacillus~~ coli ~~migula 1895]]~~		[[Category: Escherichia coli]]
	~~[[Category: Acid phosphatase~~]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Benvenuti, M]]		[[Category: Benvenuti M]]
	[[Category: Calderone, V]]		[[Category: Calderone V]]
	[[Category: Forleo, C]]		[[Category: Forleo C]]
	[[Category: Mangani, S]]		[[Category: Mangani S]]
	[[Category: Rossolini~~, G M~~]]		[[Category: Rossolini GM]]
	[[Category: Thaller~~, M C]]~~		[[Category: Thaller MC]]
	~~[[Category: Class b acid phosphatase]]~~
	~~[[Category: Dcmp]]~~
	~~[[Category: Dddd acid phosphatase]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Metallo-enzyme~~]]

OCA at 13:30, 16 December 2020

2020-12-16T13:30:07Z

← Older revision		Revision as of 13:30, 16 December 2020
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	==Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal==		==Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal==
	<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1rmy' size='340' side='right'caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1RMY FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1RMY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://pdbe.org/1rmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://pdbe.org/1rmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	==See Also==		==See Also==
	*[[Acid phosphatase\|Acid phosphatase]]		*[[Acid phosphatase 3D structures\|Acid phosphatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
			[[Category: Large Structures]]
	[[Category: Benvenuti, M]]		[[Category: Benvenuti, M]]
	[[Category: Calderone, V]]		[[Category: Calderone, V]]

OCA at 07:11, 8 March 2018

2018-03-08T07:11:05Z

← Older revision		Revision as of 07:11, 8 March 2018
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	==Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal==		==Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal==
	<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://pdbe.org/1rmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://pdbe.org/1rmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rmy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmy_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rmy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 08:02, 11 September 2015

2015-09-11T08:02:57Z

← Older revision		Revision as of 08:02, 11 September 2015
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	<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMY FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://pdbe.org/1rmy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Bacillus coli migula 1895]]
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	~~[[Category: Escherichia coli]]~~
	[[Category: Benvenuti, M]]		[[Category: Benvenuti, M]]
	[[Category: Calderone, V]]		[[Category: Calderone, V]]

OCA at 13:35, 25 December 2014

2014-12-25T13:35:58Z

← Older revision		Revision as of 13:35, 25 December 2014
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMY FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMY FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/APHA_ECOLI APHA_ECOLI]] Dephosphorylates several organic phosphate monoesters including 3'- and 5'-nucleotides, 2'-deoxy-5'-nucleotides, pNPP, phenyl phosphate, glycerol 2-phosphate, ribose 5-phosphate, O-phospho-L-amino acids and phytic acid, showing the highest activity with aryl phosphoesters (pNPP, phenyl phosphate and O-phospho-L-tyrosine), and to a lesser extent with 3'- and 5'-nucleotides. No activity toward ATP, phosphodiesters, glycerol-1-phosphate, glucose 1-phosphate, glucose 6-phosphate, NADP, GTP or 3',5'-cAMP, ADP or ATP. Also has a phosphotransferase activity catalyzing the transfer of low-energy phosphate groups from organic phosphate monoesters to free hydroxyl groups of various organic compounds. Capable of transferring phosphate from either pNPP or UMP to adenosine or uridine. Does not exhibit nucleotide phosphomutase activity.<ref>PMID:9011040</ref> <ref>PMID:16297670</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
	*[[Acid phosphatase\|Acid phosphatase]]		*[[Acid phosphatase\|Acid phosphatase]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Benvenuti, M.]]		[[Category: Benvenuti, M]]
	[[Category: Calderone, V.]]		[[Category: Calderone, V]]
	[[Category: Forleo, C.]]		[[Category: Forleo, C]]
	[[Category: Mangani, S.]]		[[Category: Mangani, S]]
	[[Category: Rossolini, G M.]]		[[Category: Rossolini, G M]]
	[[Category: Thaller, M C.]]		[[Category: Thaller, M C]]
	[[Category: Class b acid phosphatase]]		[[Category: Class b acid phosphatase]]
	[[Category: Dcmp]]		[[Category: Dcmp]]

OCA at 22:33, 28 September 2014

2014-09-28T22:33:52Z

← Older revision		Revision as of 22:33, 28 September 2014
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	~~[[Image:1rmy.png\|left\|200px]]~~		==Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal==
			<StructureSection load='1rmy' size='340' side='right' caption='[[1rmy]], [[Resolution\|resolution]] 1.75Å' scene=''>
	~~{{STRUCTURE_1rmy\| PDB=1rmy \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMY FirstGlance]. <br>
	===Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n8n\|1n8n]], [[1n9k\|1n9k]], [[1rm7\|1rm7]], [[1rmq\|1rmq]], [[1rmt\|1rmt]], [[1rmw\|1rmw]]</td></tr>
	~~{{ABSTRACT_PUBMED_016330049}}~~		<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APHA, NAPA, B4055, SF4149, S3580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span></td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmy RCSB], [http://www.ebi.ac.uk/pdbsum/1rmy PDBsum]</span></td></tr>
	[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmy_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Acid phosphatase\|Acid phosphatase]]		*[[Acid phosphatase\|Acid phosphatase]]
			__TOC__
	~~==Reference==~~		</StructureSection>
	~~<ref group="xtra">PMID:016330049</ref>~~<~~references group="xtra"~~/>
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]

OCA at 17:18, 20 October 2012

2012-10-20T17:18:50Z

← Older revision		Revision as of 17:18, 20 October 2012
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	==About this Structure==		==About this Structure==
	[[1rmy]] is a 2 chain structure ~~of [[Acid phosphatase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].		[[1rmy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].

	==See Also==		==See Also==

OCA: Protected "1rmy" [edit=sysop:move=sysop]

2012-07-27T00:29:54Z

Protected "1rmy" [edit=sysop:move=sysop]

← Older revision	Revision as of 00:29, 27 July 2012
(No difference)

OCA at 00:29, 27 July 2012

2012-07-27T00:29:52Z

← Older revision		Revision as of 00:29, 27 July 2012
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	~~{{Seed}}~~
	[[Image:1rmy.png\|left\|200px]]		[[Image:1rmy.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_1rmy", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_1rmy\| PDB=1rmy \| SCENE= }}		{{STRUCTURE_1rmy\| PDB=1rmy \| SCENE= }}

	===Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal===		===Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal===

			{{ABSTRACT_PUBMED_016330049}}

	==About this Structure==		==About this Structure==
	~~1RMY~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].		[[1rmy]] is a 2 chain structure of [[Acid phosphatase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].

			==See Also==
			*[[Acid phosphatase\|Acid phosphatase]]

			==Reference==
			<ref group="xtra">PMID:016330049</ref><references group="xtra"/>
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
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	[[Category: Dcmp]]		[[Category: Dcmp]]
	[[Category: Dddd acid phosphatase]]		[[Category: Dddd acid phosphatase]]
			[[Category: Hydrolase]]
	[[Category: Metallo-enzyme]]		[[Category: Metallo-enzyme]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:34:23 2009''~~

OCA at 15:34, 17 February 2009

2009-02-17T15:34:24Z

← Older revision		Revision as of 15:34, 17 February 2009
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	[[Image:1rmy.~~gif~~\|left\|200px]]		{{Seed}}
			[[Image:1rmy.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1rmy\| PDB=1rmy \| SCENE= }}		{{STRUCTURE_1rmy\| PDB=1rmy \| SCENE= }}

	~~'''~~Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal~~'''~~		===Crystal structure of AphA class B acid phosphatase/phosphotransferase ternary complex with deoxycytosine and phosphate bound to the catalytic metal===


	==About this Structure==		==About this Structure==
	1RMY is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].		1RMY is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMY OCA].
	[[Category: Acid phosphatase]]		[[Category: Acid phosphatase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	~~[[Category: Single protein]]~~
	[[Category: Benvenuti, M.]]		[[Category: Benvenuti, M.]]
	[[Category: Calderone, V.]]		[[Category: Calderone, V.]]
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	[[Category: Dddd acid phosphatase]]		[[Category: Dddd acid phosphatase]]
	[[Category: Metallo-enzyme]]		[[Category: Metallo-enzyme]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 07~~:41:~~11 2008~~''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:34:23 2009''