2a2e - Revision history

OCA at 07:17, 23 August 2023

2023-08-23T07:17:49Z

← Older revision		Revision as of 07:17, 23 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A2E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.85Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [https://pdbe.org/2a2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [https://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [https://pdbe.org/2a2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [https://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:56, 3 May 2023

2023-05-03T07:56:26Z

@@ Line 3: / Line 3: @@
 <StructureSection load='2a2e' size='340' side='right'caption='[[2a2e]], [[Resolution|resolution]] 3.85&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [https://pdbe.org/2a2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [https://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>
 </table>
@@ Line 22: / Line 21: @@
 </StructureSection>
 [[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Trna]]
+[[Category: Krasilnikov AS]]

OCA at 10:37, 28 July 2021

2021-07-28T10:37:25Z

← Older revision		Revision as of 10:37, 28 July 2021
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	<StructureSection load='2a2e' size='340' side='right'caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>		<StructureSection load='2a2e' size='340' side='right'caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2A2E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1u9s\|1u9s]], [[1nbs\|1nbs]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [~~http~~://pdbe.org/2a2e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [https://pdbe.org/2a2e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [https://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:25, 22 January 2020

2020-01-22T16:25:18Z

← Older revision		Revision as of 16:25, 22 January 2020
Line 1:		Line 1:

	==Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.==		==Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.==
	<StructureSection load='2a2e' size='340' side='right' caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>		<StructureSection load='2a2e' size='340' side='right'caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A2E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Krasilnikov, A S]]		[[Category: Krasilnikov, A S]]
	[[Category: Mondragon, A]]		[[Category: Mondragon, A]]

OCA at 07:21, 9 May 2018

2018-05-09T07:21:22Z

← Older revision		Revision as of 07:21, 9 May 2018
Line 1:		Line 1:

	==Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.==		==Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.==
	<StructureSection load='2a2e' size='340' side='right' caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>		<StructureSection load='2a2e' size='340' side='right' caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [http://pdbe.org/2a2e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [http://www.ebi.ac.uk/pdbsum/2a2e PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [http://pdbe.org/2a2e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [http://www.ebi.ac.uk/pdbsum/2a2e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2a2e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:35, 11 September 2015

2015-09-11T15:35:05Z

← Older revision		Revision as of 15:35, 11 September 2015
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [http://www.ebi.ac.uk/pdbsum/2a2e PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [http://pdbe.org/2a2e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [http://www.ebi.ac.uk/pdbsum/2a2e PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2a2e" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 22:04, 3 January 2015

2015-01-03T22:04:52Z

← Older revision		Revision as of 22:04, 3 January 2015
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	~~{{STRUCTURE_2a2e\| PDB=2a2e \| SCENE= }}~~		==Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.==
	===Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.===		<StructureSection load='2a2e' size='340' side='right' caption='[[2a2e]], [[Resolution\|resolution]] 3.85Å' scene=''>
	~~{{ABSTRACT_PUBMED_16113684}}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A2E FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OS:OSMIUM+ION'>OS</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u9s\|1u9s]], [[1nbs\|1nbs]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a2e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a2e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a2e RCSB], [http://www.ebi.ac.uk/pdbsum/2a2e PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Transfer RNA (tRNA) is produced as a precursor molecule that needs to be processed at its 3' and 5' ends. Ribonuclease P is the sole endonuclease responsible for processing the 5' end of tRNA by cleaving the precursor and leading to tRNA maturation. It was one of the first catalytic RNA molecules identified and consists of a single RNA component in all organisms and only one protein component in bacteria. It is a true multi-turnover ribozyme and one of only two ribozymes (the other being the ribosome) that are conserved in all kingdoms of life. Here we show the crystal structure at 3.85 A resolution of the RNA component of Thermotoga maritima ribonuclease P. The entire RNA catalytic component is revealed, as well as the arrangement of the two structural domains. The structure shows the general architecture of the RNA molecule, the inter- and intra-domain interactions, the location of the universally conserved regions, the regions involved in pre-tRNA recognition and the location of the active site. A model with bound tRNA is in agreement with all existing data and suggests the general basis for RNA-RNA recognition by this ribozyme.

	~~==About this Structure==~~		Crystal structure of the RNA component of bacterial ribonuclease P.,Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A Nature. 2005 Sep 22;437(7058):584-7. Epub 2005 Aug 21. PMID:16113684<ref>PMID:16113684</ref>
	~~[[2a2e]] is a 1 chain~~ structure. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2A2E OCA].~~

	==~~Reference~~==		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	~~<ref group="xtra">PMID:016113684</ref>~~<references ~~group="xtra"~~/><~~references~~/>		</div>
	[[Category: Krasilnikov, A S.]]		== References ==
	[[Category: Mondragon, A.]]		<references/>
	[[Category: Pan, T.]]		__TOC__
	[[Category: Swinger, K K.]]		</StructureSection>
	[[Category: Torres-Larios, A.]]		[[Category: Krasilnikov, A S]]
			[[Category: Mondragon, A]]
			[[Category: Pan, T]]
			[[Category: Swinger, K K]]
			[[Category: Torres-Larios, A]]
	[[Category: Coaxial helice]]		[[Category: Coaxial helice]]
	[[Category: P rna]]		[[Category: P rna]]

OCA at 08:39, 23 April 2014

2014-04-23T08:39:18Z

← Older revision		Revision as of 08:39, 23 April 2014
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	~~[[Image:2a2e.png\|left\|200px]]~~

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2a2e", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2a2e\| PDB=2a2e \| SCENE= }}		{{STRUCTURE_2a2e\| PDB=2a2e \| SCENE= }}

	===Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.===		===Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_16113684}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 16113684 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_16113684}}		{{ABSTRACT_PUBMED_16113684}}

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	==Reference==		==Reference==
	<ref group="xtra">PMID:016113684</ref><references group="xtra"/>		<ref group="xtra">PMID:016113684</ref><references group="xtra"/><references/>
	[[Category: Krasilnikov, A S.]]		[[Category: Krasilnikov, A S.]]
	[[Category: Mondragon, A.]]		[[Category: Mondragon, A.]]

OCA: Protected "2a2e" [edit=sysop:move=sysop]

2011-12-28T06:06:39Z

Protected "2a2e" [edit=sysop:move=sysop]

← Older revision	Revision as of 06:06, 28 December 2011
(No difference)

OCA at 06:06, 28 December 2011

2011-12-28T06:06:37Z

← Older revision		Revision as of 06:06, 28 December 2011
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	~~{{Seed}}~~
	[[Image:2a2e.png\|left\|200px]]		[[Image:2a2e.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA].		[[2a2e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A2E OCA].

	==Reference==		==Reference==
	~~Crystal structure of the RNA component of bacterial ribonuclease P., Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragon A, Nature. 2005 Sep 22;437(7058):584-7. Epub 2005 Aug 21.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~16113684 16113684]~~		<ref group="xtra">PMID:016113684</ref><references group="xtra"/>
	[[Category: Krasilnikov, A S.]]		[[Category: Krasilnikov, A S.]]
	[[Category: Mondragon, A.]]		[[Category: Mondragon, A.]]
Line 35:		Line 34:
	[[Category: Ribose zipper]]		[[Category: Ribose zipper]]
	[[Category: Ribozyme]]		[[Category: Ribozyme]]
			[[Category: Rna]]
	[[Category: Rnase p]]		[[Category: Rnase p]]
	[[Category: T-loop]]		[[Category: T-loop]]
Line 40:		Line 40:
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Trna]]		[[Category: Trna]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 09:04:46 2008''~~