2afa - Revision history

OCA at 07:48, 30 October 2024

2024-10-30T07:48:33Z

← Older revision		Revision as of 07:48, 30 October 2024
Line 3:		Line 3:
	<StructureSection load='2afa' size='340' side='right'caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2afa' size='340' side='right'caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>~~[[2afa]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [https://pdbe.org/2afa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [https://www.ebi.ac.uk/pdbsum/2afa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [https://pdbe.org/2afa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [https://www.ebi.ac.uk/pdbsum/2afa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
	~~== Function ==~~
	[https://www.uniprot.org/uniprot/SQUS_SALTY SQUS_SALTY] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.[HAMAP-Rule:MF_00998]<ref>PMID:18328504</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 15:		Line 13:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afa_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afa_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]~~
	[[Category: Burley SK]]		[[Category: Burley SK]]
	[[Category: Kumaran D]]		[[Category: Kumaran D]]
	[[Category: Swaminathan S]]		[[Category: Swaminathan S]]

OCA at 08:17, 15 May 2024

2024-05-15T08:17:27Z

← Older revision		Revision as of 08:17, 15 May 2024
Line 1:		Line 1:

	==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==		==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==
	<StructureSection load='2afa' size='340' side='right'caption='[[2afa]]' scene=''>		<StructureSection load='2afa' size='340' side='right'caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [https://pdbe.org/2afa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [https://www.ebi.ac.uk/pdbsum/2afa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [https://pdbe.org/2afa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [https://www.ebi.ac.uk/pdbsum/2afa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/SQUS_SALTY SQUS_SALTY] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.[HAMAP-Rule:MF_00998]<ref>PMID:18328504</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
			[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
	[[Category: Burley SK]]		[[Category: Burley SK]]
	[[Category: Kumaran D]]		[[Category: Kumaran D]]
	[[Category: Swaminathan S]]		[[Category: Swaminathan S]]

OCA at 14:40, 17 November 2021

2021-11-17T14:40:12Z

← Older revision		Revision as of 14:40, 17 November 2021
Line 1:		Line 1:

	==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==		==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==
	<StructureSection load='2afa' size='340' side='right'caption='[[2afa]]~~, [[Resolution\|resolution]] 2.15Å~~' scene=''>		<StructureSection load='2afa' size='340' side='right'caption='[[2afa]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>~~[[2afa]] is a 6 chain structure.~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr>~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [https://pdbe.org/2afa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [https://www.ebi.ac.uk/pdbsum/2afa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [~~http~~://pdbe.org/2afa PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2afa PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
	~~== Function ==~~
	[[http://www.uniprot.org/uniprot/SQUS_SALTY SQUS_SALTY]] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.[HAMAP-Rule:MF_00998]<ref>PMID:18328504</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 16:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Burley~~, S K~~]]		[[Category: Burley SK]]
	[[Category: Kumaran, D]]		[[Category: Kumaran D]]
	~~[[Category: Structural genomic~~]]		[[Category: Swaminathan S]]
	[[Category: Swaminathan, S]]
	~~[[Category: Alpha/alpha-fold]]~~
	~~[[Category: Dimer-of-trimer]]~~
	~~[[Category: Isomerase]]~~
	~~[[Category: Nag isomerase]]~~
	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Renin-binding protein]]~~
	~~[[Category: T1489~~]]

OCA at 05:20, 13 February 2020

2020-02-13T05:20:48Z

← Older revision		Revision as of 05:20, 13 February 2020
Line 1:		Line 1:

	==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==		==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==
	<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2afa' size='340' side='right'caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kumaran, D]]		[[Category: Kumaran, D]]

OCA at 07:12, 9 May 2018

2018-05-09T07:12:08Z

← Older revision		Revision as of 07:12, 9 May 2018
Line 1:		Line 1:

	==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==		==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==
	<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://pdbe.org/2afa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://pdbe.org/2afa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2afa ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afa_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afa_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:29, 9 February 2016

2016-02-09T06:29:47Z

← Older revision		Revision as of 06:29, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2afa ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 19:30, 10 September 2015

2015-09-10T19:30:55Z

← Older revision		Revision as of 19:30, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yihS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://pdbe.org/2afa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/~~Q8ZKT7_SALTY Q8ZKT7_SALTY~~]] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.<ref>PMID:18328504</ref>		[[http://www.uniprot.org/uniprot/SQUS_SALTY SQUS_SALTY]] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.[HAMAP-Rule:MF_00998]<ref>PMID:18328504</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]~~
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kumaran, D]]		[[Category: Kumaran, D]]

OCA at 05:02, 25 December 2014

2014-12-25T05:02:52Z

← Older revision		Revision as of 05:02, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/Q8ZKT7_SALTY Q8ZKT7_SALTY]] Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF) (By similarity). In vitro, can also catalyze the interconversion of mannose, fructose and glucose, but has extremely low activity with glucose.<ref>PMID:18328504</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:50, 6 November 2014

2014-11-06T12:50:23Z

← Older revision		Revision as of 12:50, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>		<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yihS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yihS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K]]
	[[Category: Kumaran, D.]]		[[Category: Kumaran, D]]
	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Swaminathan, S.]]		[[Category: Swaminathan, S]]
	[[Category: Alpha/alpha-fold]]		[[Category: Alpha/alpha-fold]]
	[[Category: Dimer-of-trimer]]		[[Category: Dimer-of-trimer]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Nag isomerase]]		[[Category: Nag isomerase]]
	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
	~~[[Category: Nysgxrc~~]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Protein structure initiative]]
	~~[[Category: Psi~~]]
	[[Category: Renin-binding protein]]		[[Category: Renin-binding protein]]
	~~[[Category: Structural genomic]]~~
	[[Category: T1489]]		[[Category: T1489]]

OCA at 00:19, 30 September 2014

2014-09-30T00:19:55Z

← Older revision		Revision as of 00:19, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2afa.png\|left\|200px]]~~		==Crystal Structure of putative NAG isomerase from Salmonella typhimurium==
			<StructureSection load='2afa' size='340' side='right' caption='[[2afa]], [[Resolution\|resolution]] 2.15Å' scene=''>
	~~{{STRUCTURE_2afa\| PDB=2afa \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2afa]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AFA FirstGlance]. <br>
	===Crystal Structure of putative NAG isomerase from Salmonella typhimurium===		</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yihS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2afa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2afa OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2afa RCSB], [http://www.ebi.ac.uk/pdbsum/2afa PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2afa TOPSAN]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2afa]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AFA OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2afa_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]