2alg - Revision history

OCA at 07:49, 30 October 2024

2024-10-30T07:49:36Z

← Older revision		Revision as of 07:49, 30 October 2024
Line 15:		Line 15:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/al/2alg_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/al/2alg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 07:26, 23 August 2023

2023-08-23T07:26:05Z

← Older revision		Revision as of 07:26, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='2alg' size='340' side='right'caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2alg' size='340' side='right'caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Amygdalus_persica Amygdalus~~ persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ALG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ALG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</div></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [https://pdbe.org/2alg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [https://www.ebi.ac.uk/pdbsum/2alg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2alg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [https://pdbe.org/2alg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [https://www.ebi.ac.uk/pdbsum/2alg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2alg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/NLTP1_PRUPE NLTP1_PRUPE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.		[https://www.uniprot.org/uniprot/NLTP1_PRUPE NLTP1_PRUPE] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Amygdalus persica]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Berni, R]]		[[Category: Prunus persica]]
	[[Category: Cianci, M]]		[[Category: Berni R]]
	[[Category: Folli, C]]		[[Category: Cianci M]]
	[[Category: Folloni, S]]		[[Category: Folli C]]
	[[Category: Helliwell, J]]		[[Category: Folloni S]]
	[[Category: Pantano, S]]		[[Category: Helliwell J]]
	[[Category: Pasquato, N]]		[[Category: Pantano S]]
	[[Category: Zanotti, G]]		[[Category: Pasquato N]]
	~~[[Category: Food allergen]]~~		[[Category: Zanotti G]]
	~~[[Category: Lipid transport]]~~
	~~[[Category: Ltp]]~~
	~~[[Category: Non-specific lipid transfer protein]]~~
	~~[[Category: Ns-ltp~~]]

OCA at 08:33, 27 January 2021

2021-01-27T08:33:22Z

← Older revision		Revision as of 08:33, 27 January 2021
Line 1:		Line 1:

	==Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens==		==Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens==
	<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2alg' size='340' side='right'caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Amygdalus_persica Amygdalus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ALG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Amygdalus_persica Amygdalus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ALG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [~~http~~://pdbe.org/2alg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2alg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2alg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [https://pdbe.org/2alg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [https://www.ebi.ac.uk/pdbsum/2alg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2alg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/NLTP1_PRUPE NLTP1_PRUPE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.		[[https://www.uniprot.org/uniprot/NLTP1_PRUPE NLTP1_PRUPE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Amygdalus persica]]		[[Category: Amygdalus persica]]
			[[Category: Large Structures]]
	[[Category: Berni, R]]		[[Category: Berni, R]]
	[[Category: Cianci, M]]		[[Category: Cianci, M]]

OCA at 07:26, 9 May 2018

2018-05-09T07:26:25Z

← Older revision		Revision as of 07:26, 9 May 2018
Line 1:		Line 1:

	==Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens==		==Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens==
	<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://pdbe.org/2alg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://pdbe.org/2alg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2alg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/al/2alg_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/al/2alg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2alg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:28, 11 September 2015

2015-09-11T23:28:25Z

← Older revision		Revision as of 23:28, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Prunus_persica Prunus~~ persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ALG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Amygdalus_persica Amygdalus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ALG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 ~~Prunus~~ persica])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Amygdalus persica])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://pdbe.org/2alg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2alg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Prunus~~ persica]]		[[Category: Amygdalus persica]]
	[[Category: Berni, R]]		[[Category: Berni, R]]
	[[Category: Cianci, M]]		[[Category: Cianci, M]]

OCA at 20:50, 25 December 2014

2014-12-25T20:50:36Z

← Older revision		Revision as of 20:50, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ALG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ALG FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Prunus persica])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Prunus persica])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/NLTP1_PRUPE NLTP1_PRUPE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Prunus persica]]		[[Category: Prunus persica]]
	[[Category: Berni, R.]]		[[Category: Berni, R]]
	[[Category: Cianci, M.]]		[[Category: Cianci, M]]
	[[Category: Folli, C.]]		[[Category: Folli, C]]
	[[Category: Folloni, S.]]		[[Category: Folloni, S]]
	[[Category: Helliwell, J.]]		[[Category: Helliwell, J]]
	[[Category: Pantano, S.]]		[[Category: Pantano, S]]
	[[Category: Pasquato, N.]]		[[Category: Pasquato, N]]
	[[Category: Zanotti, G.]]		[[Category: Zanotti, G]]
	[[Category: Food allergen]]		[[Category: Food allergen]]
	[[Category: Lipid transport]]		[[Category: Lipid transport]]

OCA at 03:04, 30 September 2014

2014-09-30T03:04:27Z

← Older revision		Revision as of 03:04, 30 September 2014
Line 1:		Line 1:
	[[Image:~~2alg~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens==
			<StructureSection load='2alg' size='340' side='right' caption='[[2alg]], [[Resolution\|resolution]] 2.30Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ALG FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAO:LAURIC+ACID'>DAO</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1fk0\|1fk0]], [[1bwo\|1bwo]], [[1rzl\|1rzl]], [[1mid\|1mid]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LTP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3760 Prunus persica])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2alg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2alg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2alg RCSB], [http://www.ebi.ac.uk/pdbsum/2alg PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/al/2alg_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			This study describes the three-dimensional crystal structure of a non-specific lipid transport protein (ns-LTP) from Rosaceae. Whilst ns-LTPs from species other than Rosaceae, such as nuts, cereals, grape, oranges and vegetables are also responsible for plant food allergies, this is less frequent compared with ns-LTPs from Rosaceae in the Mediterranean area. In this heterologously expressed peach Pru p3, a ligand is present inside the central cavity of the protein, presumably a fatty acid that was present or produced in the culture medium of the expression organism Escherichia coli. Moreover, the two molecules of ns-LTP present in the asymmetric unit bind this ligand in a different way, suggesting a significant degree of plasticity for the peach ns-LTP binding cavity, despite the presence of four disulphide bridges. Two molecules are present in the asymmetric unit: molecule A is a fully liganded protein, while molecule B apparently represents a partially liganded state. Also, molecular dynamics simulation, along with other evidence, suggests that these two molecular conformations represent different states in solution. Comparison of the 3D models of different ns-LTPs justifies the evidence of a high degree of conservation of the putative IgE binding epitopes among proteins of the Rosaceae family and the presence of significant amino acid replacements in correspondence of the same regions in ns-LTPs of botanical species unrelated to Rosaceae.

	~~{{STRUCTURE_2alg\| PDB=2alg \| SCENE= }}~~		Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens.,Pasquato N, Berni R, Folli C, Folloni S, Cianci M, Pantano S, Helliwell JR, Zanotti G J Mol Biol. 2006 Feb 24;356(3):684-94. Epub 2005 Dec 7. PMID:16388823<ref>PMID:16388823</ref>

	~~===Crystal structure of peach Pru p3~~, ~~the prototypic member~~ of the ~~family of plant non-specific lipid transfer protein pan-allergens===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_16388823}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2alg]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Prunus_persica Prunus persica]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:016388823<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Prunus persica]]		[[Category: Prunus persica]]
	[[Category: Berni, R.]]		[[Category: Berni, R.]]

OCA: Protected "2alg" [edit=sysop:move=sysop]

2013-01-06T12:14:13Z

Protected "2alg" [edit=sysop:move=sysop]

← Older revision	Revision as of 12:14, 6 January 2013
(No difference)

OCA at 12:14, 6 January 2013

2013-01-06T12:14:09Z

← Older revision		Revision as of 12:14, 6 January 2013
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:2alg.png\|left\|200px]]		[[Image:2alg.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2alg", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2alg\| PDB=2alg \| SCENE= }}		{{STRUCTURE_2alg\| PDB=2alg \| SCENE= }}

	===Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens===		===Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_16388823}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 16388823 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_16388823}}		{{ABSTRACT_PUBMED_16388823}}

	==About this Structure==		==About this Structure==
	~~2ALG~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA].		[[2alg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~16388823~~</ref><references group="xtra"/>		<ref group="xtra">PMID:016388823</ref><references group="xtra"/>
	[[Category: Prunus persica]]		[[Category: Prunus persica]]
	[[Category: Berni, R.]]		[[Category: Berni, R.]]
Line 34:		Line 22:
	[[Category: Zanotti, G.]]		[[Category: Zanotti, G.]]
	[[Category: Food allergen]]		[[Category: Food allergen]]
			[[Category: Lipid transport]]
	[[Category: Ltp]]		[[Category: Ltp]]
	[[Category: Non-specific lipid transfer protein]]		[[Category: Non-specific lipid transfer protein]]
	[[Category: Ns-ltp]]		[[Category: Ns-ltp]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:50:06 2009''~~

OCA at 04:50, 18 February 2009

2009-02-18T04:50:07Z

← Older revision		Revision as of 04:50, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
	2ALG is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA].		2ALG is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Prunus_persica Prunus persica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ALG OCA].

	==Reference==		==Reference==
	Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens., Pasquato N, Berni R, Folli C, Folloni S, Cianci M, Pantano S, Helliwell JR, Zanotti G, J Mol Biol. 2006 Feb 24;356(3):684-94. Epub 2005 Dec 7. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/16388823 16388823]~~		<ref group="xtra">PMID:16388823</ref><references group="xtra"/>
	[[Category: Prunus persica]]		[[Category: Prunus persica]]
	~~[[Category: Single protein]]~~
	[[Category: Berni, R.]]		[[Category: Berni, R.]]
	[[Category: Cianci, M.]]		[[Category: Cianci, M.]]
Line 39:		Line 38:
	[[Category: Ns-ltp]]		[[Category: Ns-ltp]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 13~~:35:~~35 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:50:06 2009''