2arn - Revision history

OCA at 14:44, 17 November 2021

2021-11-17T14:44:05Z

← Older revision		Revision as of 14:44, 17 November 2021
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	<StructureSection load='2arn' size='340' side='right'caption='[[2arn]]' scene=''>		<StructureSection load='2arn' size='340' side='right'caption='[[2arn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ARN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ARN FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=2arn FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/2arn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2arn ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2arn FirstGlance], [https://www.ebi.ac.uk/pdbsum/2arn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2arn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:34, 13 February 2020

2020-02-13T05:34:45Z

← Older revision		Revision as of 05:34, 13 February 2020
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	==ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR==		==ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR==
	<StructureSection load='2arn' size='340' side='right' caption='[[2arn]]' scene=''>		<StructureSection load='2arn' size='340' side='right'caption='[[2arn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
			[[Category: Large Structures]]
	[[Category: Getzoff, E D]]		[[Category: Getzoff, E D]]
	[[Category: Pellequer, J L]]		[[Category: Pellequer, J L]]

OCA at 07:29, 9 May 2018

2018-05-09T07:29:03Z

← Older revision		Revision as of 07:29, 9 May 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2arn FirstGlance], [http://www.ebi.ac.uk/pdbsum/2arn PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2arn FirstGlance], [http://www.ebi.ac.uk/pdbsum/2arn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2arn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:22, 11 February 2016

2016-02-11T10:22:08Z

← Older revision		Revision as of 10:22, 11 February 2016
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			{{Theoretical_model}}

	==ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR==		==ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR==
	<StructureSection load='2arn' size='340' side='right' caption='[[2arn]]' scene=''>		<StructureSection load='2arn' size='340' side='right' caption='[[2arn]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Theoretical Model]]
	[[Category: Getzoff, E D]]		[[Category: Getzoff, E D]]
	[[Category: Pellequer, J L]]		[[Category: Pellequer, J L]]

OCA at 00:19, 12 September 2015

2015-09-12T00:19:20Z

← Older revision		Revision as of 00:19, 12 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2arn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:51, 8 January 2015

2015-01-08T09:51:10Z

← Older revision		Revision as of 09:51, 8 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2arn FirstGlance], [http://www.ebi.ac.uk/pdbsum/2arn PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2arn FirstGlance], [http://www.ebi.ac.uk/pdbsum/2arn PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 04:55, 29 September 2014

2014-09-29T04:55:33Z

← Older revision		Revision as of 04:55, 29 September 2014
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	~~{{Theoretical_model}}~~		==ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR==
			<StructureSection load='2arn' size='340' side='right' caption='[[2arn]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ARN FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2arn FirstGlance], [http://www.ebi.ac.uk/pdbsum/2arn PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			PAS domains are found in diverse proteins throughout all three kingdoms of life, where they apparently function in sensing and signal transduction. Although a wealth of useful sequence and functional information has become recently available, these data have not been integrated into a three-dimensional (3D) framework. The very early evolutionary development and diverse functions of PAS domains have made sequence analysis and modeling of this protein superfamily challenging. Limited sequence similarities between the approximately 50-residue PAS repeats and one region of the bacterial blue-light photosensor photoactive yellow protein (PYP), for which ground-state and light-activated crystallographic structures have been determined to high resolution, originally were identified in sequence searches using consensus sequence probes from PAS-containing proteins. Here, we found that by changing a few residues particular to PYP function, the modified PYP sequence probe also could select PAS protein sequences. By mapping a typical approximately 150-residue PAS domain sequence onto the entire crystallographic structure of PYP, we show that the PAS sequence similarities and differences are consistent with a shared 3D fold (the PAS/PYP module) with obvious potential for a ligand-binding cavity. Thus, PYP appears to prototypically exhibit all the major structural and functional features characteristic of the PAS domain superfamily: the shared PAS/PYP modular domain fold of approximately 125-150 residues, a sensor function often linked to ligand or cofactor (chromophore) binding, and signal transduction capability governed by heterodimeric assembly (to the downstream partner of PYP). This 3D PAS/PYP module provides a structural model to guide experimental testing of hypotheses regarding ligand-binding, dimerization, and signal transduction.

	~~[[Image~~:~~2arn~~.~~png\|left\|200px]]~~		Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily.,Pellequer JL, Wager-Smith KA, Kay SA, Getzoff ED Proc Natl Acad Sci U S A. 1998 May 26;95(11):5884-90. PMID:9600888<ref>PMID:9600888</ref>

	~~{{STRUCTURE_2arn\| PDB=2arn \| SCENE= }}~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~===ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR===~~		== References ==
			<references/>
	~~{{ABSTRACT_PUBMED_9600888}}~~		__TOC__
			</StructureSection>
	==~~Reference~~==
	<~~ref group="xtra">PMID:009600888<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Getzoff, E D]]		[[Category: Getzoff, E D]]
	[[Category: Pellequer, J L]]		[[Category: Pellequer, J L]]

OCA: Protected "2arn" [edit=sysop:move=sysop]

2012-10-21T09:22:31Z

Protected "2arn" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:22, 21 October 2012
(No difference)

OCA at 09:22, 21 October 2012

2012-10-21T09:22:28Z

← Older revision		Revision as of 09:22, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
	~~{{Seed}}~~
	[[Image:2arn.png\|left\|200px]]		[[Image:2arn.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2arn", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2arn\| PDB=2arn \| SCENE= }}		{{STRUCTURE_2arn\| PDB=2arn \| SCENE= }}

	===ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR===		===ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_9600888}}, adds the Publication Abstract to the page~~
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	{{ABSTRACT_PUBMED_9600888}}		{{ABSTRACT_PUBMED_9600888}}

	~~==About this Structure==~~
	~~Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ARN OCA].~~

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~9600888~~</ref><references group="xtra"/>		<ref group="xtra">PMID:009600888</ref><references group="xtra"/>
	[[Category: Getzoff, E D]]		[[Category: Getzoff, E D]]
	[[Category: Pellequer, J L]]		[[Category: Pellequer, J L]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:11:55 2010''~~

OCA at 05:11, 8 April 2010

2010-04-08T05:11:56Z

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-'''Theoretical Model'''
+{{Theoretical_model}}
-The entry 2ARN is a Theoretical Model titled 'ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR'.
+<!--
-[[Category:Theoretical Model]]
+===ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 30 09:55:39 2008''
+<!--