2avy - Revision history

OCA: Redirecting to 4v4q

2014-12-10T15:08:24Z

Redirecting to 4v4q

← Older revision		Revision as of 15:08, 10 December 2014
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	==Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.==		#REDIRECT [[4v4q]] This PDB entry is obsolete and replaced by 4v4q
	~~<StructureSection load='2avy' size='340' side='right' caption='~~[[~~2avy]], [[Resolution\|resolution]] 3.46Å' scene=''>~~
	~~== Structural highlights ==~~
	~~<table><tr><td colspan='2'>[[2avy~~]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AVY FirstGlance]. <br>
	~~</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>~~
	~~<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2aw4\|2aw4]], [[2aw7\|2aw7]], [[2awb\|2awb]]</td></tr>~~
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2avy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2avy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2avy RCSB], [http://www.ebi.ac.uk/pdbsum/2avy PDBsum]</span></td></tr>
	~~<table>~~
	~~== Evolutionary Conservation ==~~
	~~[[Image:Consurf_key_small.gif\|200px\|right]]~~
	~~Check<jmol>~~
	~~<jmolCheckbox>~~
	~~<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/av/2avy_consurf.spt"</scriptWhenChecked>~~
	~~<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>~~
	~~<text>to colour the structure by Evolutionary Conservation</text>~~
	~~</jmolCheckbox>~~
	~~</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method~~ and ~~the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].~~
	~~<div style="clear:both"></div>~~
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	~~We describe two structures of the intact bacterial ribosome from Escherichia coli determined to a resolution of 3.5 angstroms~~ by x-ray crystallography. These structures provide a detailed view of the interface between the small and large ribosomal subunits and the conformation of the peptidyl transferase center in the context of the intact ribosome. Differences between the two ribosomes reveal a high degree of flexibility between the head and the rest of the small subunit. Swiveling of the head of the small subunit observed in the present structures, coupled to the ratchet-like motion of the two subunits observed previously, suggests a mechanism for the final movements of messenger RNA (mRNA) and transfer RNAs (tRNAs) during translocation.

	Structures of the bacterial ribosome at 3.5 A resolution.,Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH Science. 2005 Nov 4;310(5749):827-34. PMID:16272117<ref>PMID:16272117</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~

	~~==See Also==~~
	*[[Ribosome 3D structures\|Ribosome 3D structures]]
	~~== References ==~~
	~~<references/>~~
	~~__TOC__~~
	~~</StructureSection>~~
	~~[[Category: Escherichia coli]]~~
	~~[[Category: Borovinskaya, M A.]]~~
	~~[[Category: Cate, J H.D.]]~~
	~~[[Category: Hau, C W.]]~~
	~~[[Category: Holton, J M.]]~~
	~~[[Category: Schuwirth, B S.]]~~
	~~[[Category: Vila-Sanjurjo, A.]]~~
	~~[[Category: Zhang, W.]]~~
	~~[[Category: 30s ribosomal subunit]]~~
	~~[[Category: Ribosome]]~~
	~~[[Category: Rna-protein complex]]~~

OCA at 01:56, 30 September 2014

2014-09-30T01:56:47Z

@@ Line 1: / Line 1: @@
-[[Image:2avy.png|left|200px]]
+==Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.==
-{{STRUCTURE_2avy|  PDB=2avy  |  SCENE=  }}
+Structures of the bacterial ribosome at 3.5 A resolution.,Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH Science. 2005 Nov 4;310(5749):827-34. PMID:16272117<ref>PMID:16272117</ref>
-===Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.===
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
 ==See Also==
-*[[Ribosomal protein S10|Ribosomal protein S10]]
+*[[Ribosome 3D structures|Ribosome 3D structures]]
-*[[Ribosomal protein S11|Ribosomal protein S11]]
+== References ==
-*[[Ribosomal protein S12|Ribosomal protein S12]]
+<references/>
-*[[Ribosomal protein S13|Ribosomal protein S13]]
+__TOC__
-*[[Ribosomal protein S14|Ribosomal protein S14]]
+</StructureSection>
 [[Category: Escherichia coli]]
 [[Category: Borovinskaya, M A.]]

OCA at 13:27, 20 October 2012

2012-10-20T13:27:46Z

← Older revision		Revision as of 13:27, 20 October 2012
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	==About this Structure==		==About this Structure==
	[[2avy]] is a 21 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S21]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]] and [[Ribosomal protein S9]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].		[[2avy]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].

	==See Also==		==See Also==

OCA: Protected "2avy" [edit=sysop:move=sysop]

2012-07-26T12:05:19Z

Protected "2avy" [edit=sysop:move=sysop]

← Older revision	Revision as of 12:05, 26 July 2012
(No difference)

OCA at 12:05, 26 July 2012

2012-07-26T12:05:16Z

@@ Line 1: / Line 1: @@
 [[Image:2avy.png|left|200px]]
 {{STRUCTURE_2avy|  PDB=2avy  |  SCENE=  }}
 ===Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.===
 {{ABSTRACT_PUBMED_16272117}}
 ==About this Structure==
-AVY is a 21 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].
+[[2avy]] is a 21 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S21]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]] and [[Ribosomal protein S9]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].
 ==Reference==
-<ref group="xtra">PMID:16272117</ref><references group="xtra"/>
+<ref group="xtra">PMID:016272117</ref><ref group="xtra">PMID:017683199</ref><references group="xtra"/>
 [[Category: Escherichia coli]]
 [[Category: Borovinskaya, M A.]]
@@ Line 33: / Line 43: @@
 [[Category: Zhang, W.]]
 [[Category: 30s ribosomal subunit]]
 [[Category: Rna-protein complex]]

OCA at 06:53, 17 February 2009

2009-02-17T06:53:50Z

← Older revision		Revision as of 06:53, 17 February 2009
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	==About this Structure==		==About this Structure==
	2AVY is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].		2AVY is a 21 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].

	==Reference==		==Reference==
	~~Structures of the bacterial ribosome at 3.5 A resolution., Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH, Science. 2005 Nov 4;310(5749):827-34.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/16272117 16272117]~~		<ref group="xtra">PMID:16272117</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	~~[[Category: Protein complex]]~~
	[[Category: Borovinskaya, M A.]]		[[Category: Borovinskaya, M A.]]
	[[Category: Cate, J H.D.]]		[[Category: Cate, J H.D.]]
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	[[Category: Rna-protein complex]]		[[Category: Rna-protein complex]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 12~~:20:~~52 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:53:49 2009''

OCA at 09:20, 28 July 2008

2008-07-28T09:20:54Z

← Older revision		Revision as of 09:20, 28 July 2008
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	[[Image:2avy.~~gif~~\|left\|200px]]		{{Seed}}
			[[Image:2avy.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2avy\| PDB=2avy \| SCENE= }}		{{STRUCTURE_2avy\| PDB=2avy \| SCENE= }}

	~~'''~~Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.~~'''~~		===Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.===


	~~==Overview==~~		<!--
	~~We describe two structures of~~ the ~~intact bacterial ribosome from Escherichia coli determined~~ to ~~a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a detailed view of~~ the ~~interface between the small and large ribosomal subunits and the conformation of the peptidyl transferase center in the context of the intact ribosome~~. ~~Differences between the two ribosomes reveal a high degree of flexibility between the head and the rest of the small subunit~~. ~~Swiveling of the head of the small subunit observed in the present structures~~, ~~coupled to~~ the ~~ratchet~~-~~like motion of the two subunits observed previously, suggests a mechanism for the final movements of messenger RNA (mRNA) and transfer RNAs (tRNAs) during translocation.~~		The line below this paragraph, {{ABSTRACT_PUBMED_16272117}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 16272117 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_16272117}}

	==About this Structure==		==About this Structure==
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	[[Category: 30s ribosomal subunit]]		[[Category: 30s ribosomal subunit]]
	[[Category: Rna-protein complex]]		[[Category: Rna-protein complex]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 19~~:32:21 2008''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 12:20:52 2008''

OCA at 16:32, 3 May 2008

2008-05-03T16:32:22Z

← Older revision		Revision as of 16:32, 3 May 2008
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	[[Image:2avy.gif\|left\|200px]]		[[Image:2avy.gif\|left\|200px]]

	{{Structure		<!--
	\|PDB~~= 2avy \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>2avy</scene>~~, ~~resolution 3~~.~~46Å~~		The line below this paragraph, containing "STRUCTURE_2avy", creates the "Structure Box" on the page.
	~~\|SITE=~~		You may change the PDB parameter (which sets the PDB file loaded into the applet)
	~~\|LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE~~-~~5'~~-~~MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene~~>		or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
	\|~~ACTIVITY~~=		or leave the SCENE parameter empty for the default display.
	\|~~GENE~~=		-->
	~~\|DOMAIN=~~		{{STRUCTURE_2avy\| PDB=2avy \| SCENE= }}
	~~\|RELATEDENTRY=[[2aw4\|2AW4]], [[2aw7\|2AW7]], [[2awb\|2AWB]]~~
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2avy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2avy OCA], [http://www.ebi.ac.uk/pdbsum/2avy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2avy RCSB]</span>
	}}

	'''Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.'''		'''Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.'''
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	[[Category: Zhang, W.]]		[[Category: Zhang, W.]]
	[[Category: 30s ribosomal subunit]]		[[Category: 30s ribosomal subunit]]
	[[Category: ~~rna~~-protein complex]]		[[Category: Rna-protein complex]]
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 19:32:21 2008''
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 01~~:58:00 2008''

OCA at 22:58, 30 March 2008

2008-03-30T22:58:03Z

← Older revision		Revision as of 22:58, 30 March 2008
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	\|PDB= 2avy \|SIZE=350\|CAPTION= <scene name='initialview01'>2avy</scene>, resolution 3.46Å		\|PDB= 2avy \|SIZE=350\|CAPTION= <scene name='initialview01'>2avy</scene>, resolution 3.46Å
	\|SITE=		\|SITE=
	\|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>		\|LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene>
	\|ACTIVITY=		\|ACTIVITY=
	\|GENE=		\|GENE=
			\|DOMAIN=
			\|RELATEDENTRY=[[2aw4\|2AW4]], [[2aw7\|2AW7]], [[2awb\|2AWB]]
			\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2avy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2avy OCA], [http://www.ebi.ac.uk/pdbsum/2avy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2avy RCSB]</span>
	}}		}}

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	[[Category: Vila-Sanjurjo, A.]]		[[Category: Vila-Sanjurjo, A.]]
	[[Category: Zhang, W.]]		[[Category: Zhang, W.]]
	~~[[Category: MG]]~~
	[[Category: 30s ribosomal subunit]]		[[Category: 30s ribosomal subunit]]
	[[Category: rna-protein complex]]		[[Category: rna-protein complex]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Mar ~~20 15~~:54:28 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:58:00 2008''

OCA at 13:54, 20 March 2008

2008-03-20T13:54:30Z

← Older revision		Revision as of 13:54, 20 March 2008
Line 1:		Line 1:
	[[Image:2avy.gif\|left\|200px]]~~<br /><applet load~~="2avy~~" size~~="350~~" color~~=~~"white" frame~~=~~"true" align="right" spinBox="true"~~		[[Image:2avy.gif\|left\|200px]]
	~~caption="~~2avy, resolution 3.46Å" />
	'''Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.'''~~<br />~~		{{Structure
			\|PDB= 2avy \|SIZE=350\|CAPTION= <scene name='initialview01'>2avy</scene>, resolution 3.46Å
			\|SITE=
			\|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
			\|ACTIVITY=
			\|GENE=
			}}

			'''Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.'''


	==Overview==		==Overview==
Line 7:		Line 16:

	==About this Structure==		==About this Structure==
	2AVY is a [~~http://en.wikipedia.org/wiki/Protein_complex~~ Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli~~] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].		2AVY is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AVY OCA].

	==Reference==		==Reference==
	Structures of the bacterial ribosome at 3.5 A resolution., Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH, Science. 2005 Nov 4;310(5749):827-34. PMID:[http://~~ispc~~.~~weizmann~~.ac.~~il/~~/~~pmbin~~/~~getpm?pmid=~~16272117 16272117]		Structures of the bacterial ribosome at 3.5 A resolution., Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH, Science. 2005 Nov 4;310(5749):827-34. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16272117 16272117]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Protein complex]]		[[Category: Protein complex]]
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	[[Category: rna-protein complex]]		[[Category: rna-protein complex]]

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