2bco - Revision history

OCA at 07:52, 30 October 2024

2024-10-30T07:52:41Z

← Older revision		Revision as of 07:52, 30 October 2024
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bc/2bco_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bc/2bco_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 11:21, 22 May 2024

2024-05-22T11:21:01Z

← Older revision		Revision as of 11:21, 22 May 2024
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	<StructureSection load='2bco' size='340' side='right'caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>		<StructureSection load='2bco' size='340' side='right'caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BCO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BCO FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.33Å</td></tr>
	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[1yw4\|1yw4]], [[1yw6\|1yw6]]~~</~~div></td></tr>~~
	~~<tr id='gene'><td class="sblockLbl"><b~~>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [https://pdbe.org/2bco PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [https://www.ebi.ac.uk/pdbsum/2bco PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bco ProSAT], [https://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [https://pdbe.org/2bco PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [https://www.ebi.ac.uk/pdbsum/2bco PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bco ProSAT], [https://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/ASTE_VIBPA ASTE_VIBPA]] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).		[https://www.uniprot.org/uniprot/ASTE_VIBPA ASTE_VIBPA] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Abashidze, M]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Acton, T]]		[[Category: Abashidze M]]
	[[Category: Benach, J]]		[[Category: Acton T]]
	[[Category: Forouhar, F]]		[[Category: Benach J]]
	[[Category: Kuzin~~, A P]]~~		[[Category: Forouhar F]]
	~~[[Category: Structural genomic~~]]		[[Category: Kuzin AP]]
	[[Category: Zhou, W]]		[[Category: Zhou W]]
	~~[[Category: Hydrolase]]~~
	~~[[Category: Nesg]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Vpr14~~]]

OCA at 11:39, 3 February 2021

2021-02-03T11:39:53Z

← Older revision		Revision as of 11:39, 3 February 2021
Line 1:		Line 1:

	==X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14==		==X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14==
	<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>		<StructureSection load='2bco' size='340' side='right'caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BCO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BCO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yw4\|1yw4]], [[1yw6\|1yw6]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [~~http~~://pdbe.org/2bco PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bco PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bco ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [https://pdbe.org/2bco PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [https://www.ebi.ac.uk/pdbsum/2bco PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bco ProSAT], [https://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/ASTE_VIBPA ASTE_VIBPA]] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).		[[https://www.uniprot.org/uniprot/ASTE_VIBPA ASTE_VIBPA]] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]
	[[Category: Acton, T]]		[[Category: Acton, T]]

OCA at 06:53, 16 May 2018

2018-05-16T06:53:47Z

← Older revision		Revision as of 06:53, 16 May 2018
Line 1:		Line 1:

	==X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14==		==X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14==
	<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>		<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://pdbe.org/2bco PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://pdbe.org/2bco PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bco ProSAT], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bc/2bco_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bc/2bco_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bco ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 09:34, 11 September 2015

2015-09-11T09:34:25Z

← Older revision		Revision as of 09:34, 11 September 2015
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	<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>		<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_parahaemolyticus Vibrio parahaemolyticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BCO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BCO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 ~~Vibrio parahaemolyticus~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://pdbe.org/2bco PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Vibrio parahaemolyticus]]~~
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]
	[[Category: Acton, T]]		[[Category: Acton, T]]

OCA at 14:34, 25 December 2014

2014-12-25T14:34:08Z

← Older revision		Revision as of 14:34, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BCO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BCO FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/ASTE_VIBPA ASTE_VIBPA]] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M]]
	[[Category: Acton, T.]]		[[Category: Acton, T]]
	[[Category: Benach, J.]]		[[Category: Benach, J]]
	[[Category: Forouhar, F.]]		[[Category: Forouhar, F]]
	[[Category: Kuzin, A P.]]		[[Category: Kuzin, A P]]
	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]		[[Category: Structural genomic]]
	[[Category: Zhou, W.]]		[[Category: Zhou, W]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Nesg]]		[[Category: Nesg]]
	[[Category: ~~Northeast structural genomics consortium]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category:~~ Protein structure initiative]]
	~~[[Category: Psi]]~~
	~~[[Category: Structural genomic~~]]
	[[Category: Vpr14]]		[[Category: Vpr14]]

OCA at 02:13, 30 September 2014

2014-09-30T02:13:45Z

← Older revision		Revision as of 02:13, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2bco.png\|left\|200px]]~~		==X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14==
			<StructureSection load='2bco' size='340' side='right' caption='[[2bco]], [[Resolution\|resolution]] 2.33Å' scene=''>
	~~{{STRUCTURE_2bco\| PDB=2bco \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BCO FirstGlance]. <br>
	===X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
			<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yw4\|1yw4]], [[1yw6\|1yw6]]</td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])</td></tr>
	[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA].		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bco OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bco RCSB], [http://www.ebi.ac.uk/pdbsum/2bco PDBsum], [http://www.topsan.org/Proteins/NESGC/2bco TOPSAN]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bc/2bco_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]

OCA: Protected "2bco" [edit=sysop:move=sysop]

2013-01-06T11:26:49Z

Protected "2bco" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:26, 6 January 2013
(No difference)

OCA at 11:26, 6 January 2013

2013-01-06T11:26:42Z

← Older revision		Revision as of 11:26, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2bco.png\|left\|200px]]		[[Image:2bco.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2bco", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2bco\| PDB=2bco \| SCENE= }}		{{STRUCTURE_2bco\| PDB=2bco \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~2BCO~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA].		[[2bco]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA].
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]
Line 23:		Line 16:
	[[Category: NESG, Northeast Structural Genomics Consortium.]]		[[Category: NESG, Northeast Structural Genomics Consortium.]]
	[[Category: Zhou, W.]]		[[Category: Zhou, W.]]
			[[Category: Hydrolase]]
	[[Category: Nesg]]		[[Category: Nesg]]
	[[Category: Northeast structural genomics consortium]]		[[Category: Northeast structural genomics consortium]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Vpr14]]		[[Category: Vpr14]]
	~~[[Category: X-ray structure]]~~

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:49:14 2008''~~

OCA at 15:49, 16 November 2008

2008-11-16T15:49:15Z

← Older revision		Revision as of 15:49, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
	2BCO is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA].		2BCO is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BCO OCA].
	~~[[Category: Single protein]]~~
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]
Line 32:		Line 31:
	[[Category: X-ray structure]]		[[Category: X-ray structure]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 05~~:59:17 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:49:14 2008''