2blu - Revision history

OCA at 11:22, 22 May 2024

2024-05-22T11:22:34Z

← Older revision		Revision as of 11:22, 22 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BLU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=TLA:L(+)~~-~~TARTARIC+ACID'>TLA</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]~~</~~div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [https://pdbe.org/2blu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [https://www.ebi.ac.uk/pdbsum/2blu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2blu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [https://pdbe.org/2blu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [https://www.ebi.ac.uk/pdbsum/2blu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2blu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.		[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Nanao~~, M H~~]]		[[Category: Nanao MH]]
	[[Category: Ravelli, R]]		[[Category: Ravelli R]]
	~~[[Category: Phasing]]~~
	~~[[Category: Plant protein]]~~
	~~[[Category: Radiation damage]]~~
	~~[[Category: Rip]]~~
	~~[[Category: Synchrotron]]~~
	~~[[Category: Taste-modifying protein~~]]

OCA at 09:59, 26 May 2021

2021-05-26T09:59:07Z

← Older revision		Revision as of 09:59, 26 May 2021
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	<StructureSection load='2blu' size='340' side='right'caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2blu' size='340' side='right'caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BLU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [~~http~~://pdbe.org/2blu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2blu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2blu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [https://pdbe.org/2blu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [https://www.ebi.ac.uk/pdbsum/2blu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2blu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.		[[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:14, 21 August 2019

2019-08-21T07:14:42Z

← Older revision		Revision as of 07:14, 21 August 2019
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	==Thaumatin After A High Dose X-Ray "Burn"==		==Thaumatin After A High Dose X-Ray "Burn"==
	<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2blu' size='340' side='right'caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bl/2blu_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bl/2blu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Nanao, M H]]		[[Category: Nanao, M H]]

OCA at 17:29, 16 November 2017

2017-11-16T17:29:08Z

← Older revision		Revision as of 17:29, 16 November 2017
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	==Thaumatin After A High Dose X-Ray "Burn"==		==Thaumatin After A High Dose X-Ray "Burn"==
	<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://pdbe.org/2blu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://pdbe.org/2blu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2blu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 02:48, 10 February 2016

2016-02-10T02:48:52Z

← Older revision		Revision as of 02:48, 10 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2blu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:37, 30 September 2015

2015-09-30T06:37:28Z

← Older revision		Revision as of 06:37, 30 September 2015
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	==~~THAUMATIN AFTER~~ A ~~HIGH DOSE~~ X-~~RAY~~ "~~BURN~~"==		==Thaumatin After A High Dose X-Ray "Burn"==
	<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thaumatococcus_daniellii_(katemfe)~~ Thaumatococcus daniellii ~~(katemfe)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Thaumatococcus daniellii]]
	[[Category: Nanao, M H]]		[[Category: Nanao, M H]]
	[[Category: Ravelli, R B]]		[[Category: Ravelli, R]]
	[[Category: Phasing]]		[[Category: Phasing]]
	[[Category: Plant protein]]		[[Category: Plant protein]]

OCA at 04:38, 11 September 2015

2015-09-11T04:38:17Z

← Older revision		Revision as of 04:38, 11 September 2015
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://pdbe.org/2blu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2blu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:16, 25 December 2014

2014-12-25T11:16:09Z

← Older revision		Revision as of 11:16, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii_(katemfe) Thaumatococcus daniellii (katemfe)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii_(katemfe) Thaumatococcus daniellii (katemfe)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Nanao, M H.]]		[[Category: Nanao, M H]]
	[[Category: Ravelli, R B.]]		[[Category: Ravelli, R B]]
	[[Category: Phasing]]		[[Category: Phasing]]
	[[Category: Plant protein]]		[[Category: Plant protein]]

OCA at 23:57, 29 September 2014

2014-09-29T23:57:38Z

← Older revision		Revision as of 23:57, 29 September 2014
Line 1:		Line 1:
	[[Image:~~2blu~~.~~png~~\|~~left~~\|~~200px~~]]		==THAUMATIN AFTER A HIGH DOSE X-RAY "BURN"==
			<StructureSection load='2blu' size='340' side='right' caption='[[2blu]], [[Resolution\|resolution]] 1.40Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2blu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii_(katemfe) Thaumatococcus daniellii (katemfe)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BLU FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kwn\|1kwn]], [[1lr2\|1lr2]], [[1lr3\|1lr3]], [[1lxz\|1lxz]], [[1ly0\|1ly0]], [[1pp3\|1pp3]], [[1rqw\|1rqw]], [[1thi\|1thi]], [[1thu\|1thu]], [[1thv\|1thv]], [[1thw\|1thw]], [[2blr\|2blr]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2blu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2blu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2blu RCSB], [http://www.ebi.ac.uk/pdbsum/2blu PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bl/2blu_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Specific radiation damage can be used to solve macromolecular structures using the radiation-damage-induced phasing (RIP) method. The method has been investigated for six disulfide-containing test structures (elastase, insulin, lysozyme, ribonuclease A, trypsin and thaumatin) using data sets that were collected on a third-generation synchrotron undulator beamline with a highly attenuated beam. Each crystal was exposed to the unattenuated X-ray beam between the collection of a 'before' and an 'after' data set. The X-ray 'burn'-induced intensity differences ranged from 5 to 15%, depending on the protein investigated. X-ray-susceptible substructures were determined using the integrated direct and Patterson methods in SHELXD. The best substructures were found by downscaling the 'after' data set in SHELXC by a scale factor K, with optimal values ranging from 0.96 to 0.99. The initial substructures were improved through iteration with SHELXE by the addition of negatively occupied sites as well as a large number of relatively weak sites. The final substructures ranged from 40 to more than 300 sites, with strongest peaks as high as 57sigma. All structures except one could be solved: it was not possible to find the initial substructure for ribonuclease A, however, SHELXE iteration starting with the known five most susceptible sites gave excellent maps. Downscaling proved to be necessary for the solution of elastase, lysozyme and thaumatin and reduced the number of SHELXE iterations in the other cases. The combination of downscaling and substructure iteration provides important benefits for the phasing of macromolecular structures using radiation damage.

	~~{{STRUCTURE_2blu\| PDB=2blu \| SCENE= }}~~		Improving radiation-damage substructures for RIP.,Nanao MH, Sheldrick GM, Ravelli RB Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1227-37. Epub 2005, Aug 16. PMID:16131756<ref>PMID:16131756</ref>

	~~===THAUMATIN AFTER A HIGH DOSE X-RAY "BURN"===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_16131756}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2blu]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thaumatococcus_daniellii_(katemfe) Thaumatococcus daniellii (katemfe)]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2BLU OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:016131756<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Nanao, M H.]]		[[Category: Nanao, M H.]]
	[[Category: Ravelli, R B.]]		[[Category: Ravelli, R B.]]

OCA: Protected "2blu" [edit=sysop:move=sysop]

2013-01-06T09:25:41Z

Protected "2blu" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:25, 6 January 2013
(No difference)