2cvm - Revision history

OCA at 07:01, 1 December 2021

2021-12-01T07:01:28Z

← Older revision		Revision as of 07:01, 1 December 2021
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	<StructureSection load='2cvm' size='340' side='right'caption='[[2cvm]]' scene=''>		<StructureSection load='2cvm' size='340' side='right'caption='[[2cvm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CVM FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CVM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=2cvm FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/2cvm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvm ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cvm FirstGlance], [https://www.ebi.ac.uk/pdbsum/2cvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:45, 26 February 2020

2020-02-26T10:45:09Z

← Older revision		Revision as of 10:45, 26 February 2020
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	==HOMOLOGY MODELING OF SOXZ==		==HOMOLOGY MODELING OF SOXZ==
	<StructureSection load='2cvm' size='340' side='right' caption='[[2cvm]]' scene=''>		<StructureSection load='2cvm' size='340' side='right'caption='[[2cvm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
			[[Category: Large Structures]]
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA at 07:59, 23 May 2018

2018-05-23T07:59:35Z

← Older revision		Revision as of 07:59, 23 May 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvm FirstGlance], [http://www.ebi.ac.uk/pdbsum/2cvm PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvm FirstGlance], [http://www.ebi.ac.uk/pdbsum/2cvm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:29, 11 February 2016

2016-02-11T10:29:17Z

← Older revision		Revision as of 10:29, 11 February 2016
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			{{Theoretical_model}}

	==HOMOLOGY MODELING OF SOXZ==		==HOMOLOGY MODELING OF SOXZ==
	<StructureSection load='2cvm' size='340' side='right' caption='[[2cvm]]' scene=''>		<StructureSection load='2cvm' size='340' side='right' caption='[[2cvm]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Theoretical Model]]
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA at 22:18, 10 September 2015

2015-09-10T22:18:04Z

← Older revision		Revision as of 22:18, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2cvm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:07, 15 January 2015

2015-01-15T16:07:14Z

← Older revision		Revision as of 16:07, 15 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvm FirstGlance], [http://www.ebi.ac.uk/pdbsum/2cvm PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvm FirstGlance], [http://www.ebi.ac.uk/pdbsum/2cvm PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 02:08, 29 September 2014

2014-09-29T02:08:39Z

← Older revision		Revision as of 02:08, 29 September 2014
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	~~{{Theoretical_model}}~~		==HOMOLOGY MODELING OF SOXZ==
			<StructureSection load='2cvm' size='340' side='right' caption='[[2cvm]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CVM FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvm FirstGlance], [http://www.ebi.ac.uk/pdbsum/2cvm PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Microbial redox reactions of inorganic sulfur compounds, mainly the sulfur anions, are one of the vital reactions responsible for the environmental sulfur balance. These reactions are mediated by phylogenetically diverse prokaryotes, which also take part in the extraction of metal ions from their sulfur containing ores. The sulfur oxidizing gene cluster (sox) of alpha-Proteobacteria comprises of at least 16 genes, forming two transcriptional units, viz., soxSRT and soxVWXYZABCDEFGH. SoxY is known to be a sulfur covalently binding protein, which binds sulfur anions (such as sulfate) to form SoxY-thiocysteine-S-sulfate, the first covalently bound sulfur adduct in the novel global sulfur anion oxidation cycle. SoxZ, a sulfur compound chelating protein, binds to SoxY forming a complex to which SoxB, a sulfate thiol-esterase, binds and ultimately cleaves the sulfur adduct. We employed homology modeling to construct the three-dimensional structures of the SoxY, SoxZ, and SoxB from Paracoccus pantotrophus. With the help of docking and molecular dynamics studies we have identified the residues of SoxY, SoxZ, and SoxB involved in the interaction. The probable mechanisms of the binding of SoxY with sulfate as well as the removal of sulfate from the SoxYZ complex are also established. Our study provides a rational basis to illustrate the molecular mechanism of the biochemistry of sulfur anion oxidation reactions by these industrially important organisms.

	~~[[Image~~:~~2cvm~~.~~png\|left\|200px]]~~		A structural study towards the understanding of the interactions of SoxY, SoxZ, and SoxB, leading to the oxidation of sulfur anions via the novel global sulfur oxidizing (sox) operon.,Bagchi A, Ghosh TC Biochem Biophys Res Commun. 2005 Sep 23;335(2):609-15. PMID:16084835<ref>PMID:16084835</ref>

	~~{{STRUCTURE_2cvm\| PDB=2cvm \| SCENE= }}~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~===HOMOLOGY MODELING OF SOXZ===~~		== References ==
			<references/>
	~~{{ABSTRACT_PUBMED_16084835}}~~		__TOC__
			</StructureSection>
	==~~Reference~~==
	<~~ref group="xtra">PMID:016084835<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA: Protected "2cvm" [edit=sysop:move=sysop]

2012-10-21T08:43:02Z

Protected "2cvm" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:43, 21 October 2012
(No difference)

OCA at 08:42, 21 October 2012

2012-10-21T08:42:59Z

← Older revision		Revision as of 08:42, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
	~~{{Seed}}~~
	[[Image:2cvm.png\|left\|200px]]		[[Image:2cvm.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2cvm", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2cvm\| PDB=2cvm \| SCENE= }}		{{STRUCTURE_2cvm\| PDB=2cvm \| SCENE= }}

	===HOMOLOGY MODELING OF SOXZ===		===HOMOLOGY MODELING OF SOXZ===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_16084835}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 16084835 is the PubMed ID number.~~
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	{{ABSTRACT_PUBMED_16084835}}		{{ABSTRACT_PUBMED_16084835}}

	~~==About this Structure==~~
	~~Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVM OCA].~~

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~16084835~~</ref><references group="xtra"/>		<ref group="xtra">PMID:016084835</ref><references group="xtra"/>
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:43:26 2010''~~

OCA at 03:43, 8 April 2010

2010-04-08T03:43:26Z

@@ Line 1: / Line 1: @@
-'''Theoretical Model'''
+{{Theoretical_model}}
-The entry 2CVM is a Theoretical Model titled 'Homology modeling of SoxZ'.
+<!--
-[[Category:Theoretical Model]]
+===HOMOLOGY MODELING OF SOXZ===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 30 09:56:07 2008''
+<!--