2d4e - Revision history

OCA at 08:24, 25 October 2023

2023-10-25T08:24:07Z

← Older revision		Revision as of 08:24, 25 October 2023
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	<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [https://pdbe.org/2d4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [https://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [https://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [https://pdbe.org/2d4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [https://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [https://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q5SJP9_THET8 Q5SJP9_THET8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Thet8~~]]		[[Category: Thermus thermophilus HB8]]
	[[Category: Kunishima, N]]		[[Category: Kunishima N]]
	[[Category: Mizutani, H]]		[[Category: Mizutani H]]
	~~[[Category: Structural genomic]]~~
	~~[[Category: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase]]~~
	~~[[Category: Hpcc]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: Rsgi~~]]

OCA at 10:27, 8 December 2021

2021-12-08T10:27:19Z

← Older revision		Revision as of 10:27, 8 December 2021
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	<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2D4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [~~http~~://pdbe.org/2d4e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [https://pdbe.org/2d4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [https://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [https://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:35, 4 March 2020

2020-03-04T07:35:30Z

← Older revision		Revision as of 07:35, 4 March 2020
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	==Crystal Structure of the HpcC from Thermus Thermophilus HB8==		==Crystal Structure of the HpcC from Thermus Thermophilus HB8==
	<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2d4e' size='340' side='right'caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
			[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]

OCA at 06:14, 30 May 2018

2018-05-30T06:14:28Z

← Older revision		Revision as of 06:14, 30 May 2018
Line 1:		Line 1:

	==Crystal Structure of the HpcC from Thermus Thermophilus HB8==		==Crystal Structure of the HpcC from Thermus Thermophilus HB8==
	<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://pdbe.org/2d4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://pdbe.org/2d4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4e ProSAT], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4e_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4e_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:37, 8 February 2016

2016-02-08T19:37:21Z

← Older revision		Revision as of 19:37, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4e ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 14:44, 10 September 2015

2015-09-10T14:44:56Z

← Older revision		Revision as of 14:44, 10 September 2015
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	<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb8 Thermus thermophilus hb8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://pdbe.org/2d4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
	[[Category: ~~Thermus thermophilus hb8~~]]		[[Category: Thet8]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]
	[[Category: Mizutani, H]]		[[Category: Mizutani, H]]

OCA at 16:12, 15 January 2015

2015-01-15T16:12:55Z

← Older revision		Revision as of 16:12, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N]]
	[[Category: Mizutani, H.]]		[[Category: Mizutani, H]]
	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]		[[Category: Structural genomic]]
	[[Category: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase]]
	[[Category: Hpcc]]		[[Category: Hpcc]]
Line 29:		Line 29:
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	[[Category: Rsgi]]		[[Category: Rsgi]]
	~~[[Category: Structural genomic]]~~

OCA at 01:37, 30 September 2014

2014-09-30T01:37:20Z

← Older revision		Revision as of 01:37, 30 September 2014
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	~~[[Image:2d4e.png\|left\|200px]]~~		==Crystal Structure of the HpcC from Thermus Thermophilus HB8==
			<StructureSection load='2d4e' size='340' side='right' caption='[[2d4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	~~{{STRUCTURE_2d4e\| PDB=2d4e \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D4E FirstGlance]. <br>
	===Crystal Structure of the HpcC from Thermus Thermophilus HB8===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconic-semialdehyde_dehydrogenase 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.60 1.2.1.60] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d4e RCSB], [http://www.ebi.ac.uk/pdbsum/2d4e PDBsum], [http://www.topsan.org/Proteins/RSGI/2d4e TOPSAN]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4e_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]

OCA: Protected "2d4e" [edit=sysop:move=sysop]

2013-01-06T10:51:54Z

Protected "2d4e" [edit=sysop:move=sysop]

← Older revision	Revision as of 10:51, 6 January 2013
(No difference)

OCA at 10:51, 6 January 2013

2013-01-06T10:51:52Z

← Older revision		Revision as of 10:51, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2d4e.png\|left\|200px]]		[[Image:2d4e.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2d4e", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2d4e\| PDB=2d4e \| SCENE= }}		{{STRUCTURE_2d4e\| PDB=2d4e \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~2D4E~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA].		[[2d4e]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4E OCA].
	[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]		[[Category: 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus hb8]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]
	[[Category: Mizutani, H.]]		[[Category: Mizutani, H.]]
Line 24:		Line 17:
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
			[[Category: Oxidoreductase]]
	[[Category: Riken structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:57:57 2008''~~