2d64 - Revision history

OCA at 11:34, 22 May 2024

2024-05-22T11:34:40Z

← Older revision		Revision as of 11:34, 22 May 2024
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	<StructureSection load='2d64' size='340' side='right'caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2d64' size='340' side='right'caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D64 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D64 FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>~~, ~~<scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em~~;~~'>[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</div>~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>aspC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])</td~~><~~/tr>~~
	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1]~~ </~~span~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [https://pdbe.org/2d64 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [https://www.ebi.ac.uk/pdbsum/2d64 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d64 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [https://pdbe.org/2d64 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [https://www.ebi.ac.uk/pdbsum/2d64 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d64 ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q304P7_ECOLX Q304P7_ECOLX]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bacillus~~ coli ~~migula 1895]]~~		[[Category: Escherichia coli]]
	~~[[Category: Aspartate transaminase~~]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu S]]
	[[Category: Masui, R]]		[[Category: Masui R]]
	[[Category: Nakagawa, N]]		[[Category: Nakagawa N]]
	[[Category: Tada, H]]		[[Category: Tada H]]
	[[Category: Tanaka, Y]]		[[Category: Tanaka Y]]
	[[Category: Yano, T]]		[[Category: Yano T]]
	~~[[Category: Aspartate aminotransferase]]~~
	~~[[Category: Directed evolution]]~~
	~~[[Category: Protein design]]~~
	~~[[Category: Protein enginnering]]~~
	~~[[Category: Transferase~~]]

OCA at 11:54, 3 February 2021

2021-02-03T11:54:44Z

← Older revision		Revision as of 11:54, 3 February 2021
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	==Aspartate Aminotransferase Mutant MABC With Isovaleric Acid==		==Aspartate Aminotransferase Mutant MABC With Isovaleric Acid==
	<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2d64' size='340' side='right'caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2D64 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D64 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [~~http~~://pdbe.org/2d64 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2d64 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2d64 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [https://pdbe.org/2d64 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [https://www.ebi.ac.uk/pdbsum/2d64 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d64 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
	*[[Aspartate ~~Aminotransferase~~\|Aspartate ~~Aminotransferase~~]]		*[[Aspartate aminotransferase 3D structures\|Aspartate aminotransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Aspartate transaminase]]		[[Category: Aspartate transaminase]]
			[[Category: Large Structures]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
	[[Category: Masui, R]]		[[Category: Masui, R]]

OCA at 06:25, 30 May 2018

2018-05-30T06:25:06Z

← Older revision		Revision as of 06:25, 30 May 2018
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	==Aspartate Aminotransferase Mutant MABC With Isovaleric Acid==		==Aspartate Aminotransferase Mutant MABC With Isovaleric Acid==
	<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://pdbe.org/2d64 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://pdbe.org/2d64 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d64 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/2d64_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/2d64_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 22:48, 7 February 2016

2016-02-07T22:48:08Z

← Older revision		Revision as of 22:48, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d64 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 05:35, 10 September 2015

2015-09-10T05:35:25Z

← Older revision		Revision as of 05:35, 10 September 2015
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	<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D64 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D64 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://pdbe.org/2d64 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Bacillus coli migula 1895]]
	[[Category: Aspartate transaminase]]		[[Category: Aspartate transaminase]]
	~~[[Category: Escherichia coli]]~~
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
	[[Category: Masui, R]]		[[Category: Masui, R]]

OCA at 16:30, 15 January 2015

2015-01-15T16:30:47Z

← Older revision		Revision as of 16:30, 15 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D64 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D64 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	[[Category: Aspartate transaminase]]		[[Category: Aspartate transaminase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Kuramitsu, S.]]		[[Category: Kuramitsu, S]]
	[[Category: Masui, R.]]		[[Category: Masui, R]]
	[[Category: Nakagawa, N.]]		[[Category: Nakagawa, N]]
	[[Category: Tada, H.]]		[[Category: Tada, H]]
	[[Category: Tanaka, Y.]]		[[Category: Tanaka, Y]]
	[[Category: Yano, T.]]		[[Category: Yano, T]]
	[[Category: Aspartate aminotransferase]]		[[Category: Aspartate aminotransferase]]
	[[Category: Directed evolution]]		[[Category: Directed evolution]]

OCA at 03:29, 29 September 2014

2014-09-29T03:29:37Z

← Older revision		Revision as of 03:29, 29 September 2014
Line 1:		Line 1:
	~~[[Image:2d64.png\|left\|200px]]~~		==Aspartate Aminotransferase Mutant MABC With Isovaleric Acid==
			<StructureSection load='2d64' size='340' side='right' caption='[[2d64]], [[Resolution\|resolution]] 2.05Å' scene=''>
	~~{{STRUCTURE_2d64\| PDB=2d64 \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D64 FirstGlance]. <br>
	===Aspartate Aminotransferase Mutant MABC With Isovaleric Acid===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d5y\|2d5y]], [[2d61\|2d61]], [[2d63\|2d63]], [[2d65\|2d65]], [[2d66\|2d66]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aspC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] </span></td></tr>
	[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA].		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d64 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d64 RCSB], [http://www.ebi.ac.uk/pdbsum/2d64 PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/2d64_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]		*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]
			__TOC__
			</StructureSection>
	[[Category: Aspartate transaminase]]		[[Category: Aspartate transaminase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]

OCA at 08:04, 20 October 2012

2012-10-20T08:04:28Z

← Older revision		Revision as of 08:04, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
	[[2d64]] is a 1 chain structure ~~of [[Aspartate Aminotransferase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA].		[[2d64]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA].

	==See Also==		==See Also==

OCA: Protected "2d64" [edit=sysop:move=sysop]

2012-07-25T18:21:43Z

Protected "2d64" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:21, 25 July 2012
(No difference)

OCA at 18:21, 25 July 2012

2012-07-25T18:21:42Z

← Older revision		Revision as of 18:21, 25 July 2012
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	~~{{Seed}}~~
	[[Image:2d64.png\|left\|200px]]		[[Image:2d64.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2d64", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2d64\| PDB=2d64 \| SCENE= }}		{{STRUCTURE_2d64\| PDB=2d64 \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~2D64~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA].		[[2d64]] is a 1 chain structure of [[Aspartate Aminotransferase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D64 OCA].

			==See Also==
			*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]
	[[Category: Aspartate transaminase]]		[[Category: Aspartate transaminase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
Line 27:		Line 23:
	[[Category: Protein design]]		[[Category: Protein design]]
	[[Category: Protein enginnering]]		[[Category: Protein enginnering]]
			[[Category: Transferase]]
	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 16:59:51 2009''~~