2dcd - Revision history

OCA at 00:51, 21 November 2024

2024-11-21T00:51:49Z

← Older revision		Revision as of 00:51, 21 November 2024
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 08:25, 25 October 2023

2023-10-25T08:25:19Z

← Older revision		Revision as of 08:25, 25 October 2023
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	<StructureSection load='2dcd' size='340' side='right'caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2dcd' size='340' side='right'caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bovin Bovin~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</div></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [https://pdbe.org/2dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [https://www.ebi.ac.uk/pdbsum/2dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [https://pdbe.org/2dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [https://www.ebi.ac.uk/pdbsum/2dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcd ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/CATB_BOVIN CATB_BOVIN] Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bovin]]~~		[[Category: Bos taurus]]
	~~[[Category: Cathepsin B~~]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Watanabe, D]]		[[Category: Watanabe D]]
	~~[[Category: Ca078]]~~
	~~[[Category: Cathepsin b]]~~
	~~[[Category: Cysteine protease]]~~
	~~[[Category: Ec 3 4.22 1]]~~
	~~[[Category: Hydrolase~~]]

OCA at 09:48, 5 May 2021

2021-05-05T09:48:43Z

← Older revision		Revision as of 09:48, 5 May 2021
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	<StructureSection load='2dcd' size='340' side='right'caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2dcd' size='340' side='right'caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [~~http~~://pdbe.org/2dcd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dcd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [https://pdbe.org/2dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [https://www.ebi.ac.uk/pdbsum/2dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcd ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:07, 24 July 2019

2019-07-24T09:07:20Z

← Older revision		Revision as of 09:07, 24 July 2019
Line 1:		Line 1:

	==X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex==		==X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex==
	<StructureSection load='2dcd' size='340' side='right' caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2dcd' size='340' side='right'caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcd ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

			==See Also==
			*[[Cathepsin 3D structures\|Cathepsin 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bovin]]		[[Category: Bovin]]
	[[Category: Cathepsin B]]		[[Category: Cathepsin B]]
			[[Category: Large Structures]]
	[[Category: Watanabe, D]]		[[Category: Watanabe, D]]
	[[Category: Ca078]]		[[Category: Ca078]]

OCA at 10:42, 12 October 2017

2017-10-12T10:42:13Z

← Older revision		Revision as of 10:42, 12 October 2017
Line 1:		Line 1:

	==X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex==		==X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex==
	<StructureSection load='2dcd' size='340' side='right' caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2dcd' size='340' side='right' caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bos_taurus Bos taurus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://pdbe.org/2dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://pdbe.org/2dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcd ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 18:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcd ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

	~~==See Also==~~
	*[[Cathepsin\|Cathepsin]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bos taurus~~]]		[[Category: Bovin]]
	[[Category: Cathepsin B]]		[[Category: Cathepsin B]]
	[[Category: Watanabe, D]]		[[Category: Watanabe, D]]

OCA at 04:02, 8 February 2016

2016-02-08T04:02:52Z

← Older revision		Revision as of 04:02, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 07:40, 10 September 2015

2015-09-10T07:40:18Z

← Older revision		Revision as of 07:40, 10 September 2015
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://pdbe.org/2dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 17:43, 15 January 2015

2015-01-15T17:43:05Z

← Older revision		Revision as of 17:43, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Cathepsin B]]		[[Category: Cathepsin B]]
	[[Category: Watanabe, D.]]		[[Category: Watanabe, D]]
	[[Category: Ca078]]		[[Category: Ca078]]
	[[Category: Cathepsin b]]		[[Category: Cathepsin b]]

OCA at 05:04, 29 September 2014

2014-09-29T05:04:56Z

← Older revision		Revision as of 05:04, 29 September 2014
Line 1:		Line 1:
	~~[[Image:2dcd.png\|left\|200px]]~~		==X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex==
			<StructureSection load='2dcd' size='340' side='right' caption='[[2dcd]], [[Resolution\|resolution]] 2.50Å' scene=''>
	~~{{STRUCTURE_2dcd\| PDB=2dcd \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCD FirstGlance]. <br>
	===X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=78A:N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE'>78A</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ito\|1ito]], [[1qdq\|1qdq]], [[2dc6\|2dc6]], [[2dc7\|2dc7]], [[2dc8\|2dc8]], [[2dc9\|2dc9]], [[2dca\|2dca]], [[2dcb\|2dcb]], [[2dcc\|2dcc]]</td></tr>
	~~{{ABSTRACT_PUBMED_016950396}}~~		<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_B Cathepsin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.1 3.4.22.1] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dcd RCSB], [http://www.ebi.ac.uk/pdbsum/2dcd PDBsum]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcd_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Cathepsin\|Cathepsin]]		*[[Cathepsin\|Cathepsin]]
			__TOC__
	~~==Reference==~~		</StructureSection>
	~~<ref group="xtra">PMID:016950396</ref>~~<~~references group="xtra"~~/>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Cathepsin B]]		[[Category: Cathepsin B]]

OCA at 08:50, 20 October 2012

2012-10-20T08:50:39Z

← Older revision		Revision as of 08:50, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[2dcd]] is a 1 chain structure ~~of [[Cathepsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA].		[[2dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCD OCA].

	==See Also==		==See Also==