2dev - Revision history

OCA at 08:26, 25 October 2023

2023-10-25T08:26:09Z

← Older revision		Revision as of 08:26, 25 October 2023
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	<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.45Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [https://pdbe.org/2dev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [https://www.ebi.ac.uk/pdbsum/2dev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [https://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [https://pdbe.org/2dev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [https://www.ebi.ac.uk/pdbsum/2dev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [https://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q72IR6_THET2 Q72IR6_THET2]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Inagaki, E~~]]		[[Category: Thermus thermophilus]]
	[[Category: ~~Nakano, N~~]]		[[Category: Inagaki E]]
	[[Category: ~~Structural genomic~~]]		[[Category: Nakano N]]
	[[Category: Shinkai, A]]		[[Category: Shinkai A]]
	[[Category: Yokoyama, S]]		[[Category: Yokoyama S]]
	~~[[Category: Cesium ion]]~~
	~~[[Category: Dodecamer]]~~
	~~[[Category: Flavin]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Rsgi]]~~
	~~[[Category: Unknown function~~]]

OCA at 10:30, 8 December 2021

2021-12-08T10:30:46Z

← Older revision		Revision as of 10:30, 8 December 2021
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	<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DEV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [~~http~~://pdbe.org/2dev PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dev PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [https://pdbe.org/2dev PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [https://www.ebi.ac.uk/pdbsum/2dev PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [https://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:43, 4 March 2020

2020-03-04T07:43:10Z

← Older revision		Revision as of 07:43, 4 March 2020
Line 1:		Line 1:

	==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==		==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==
	<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2dev' size='340' side='right'caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
			[[Category: Large Structures]]
	[[Category: Inagaki, E]]		[[Category: Inagaki, E]]
	[[Category: Nakano, N]]		[[Category: Nakano, N]]

OCA at 06:26, 30 May 2018

2018-05-30T06:26:39Z

← Older revision		Revision as of 06:26, 30 May 2018
Line 1:		Line 1:

	==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==		==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==
	<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://pdbe.org/2dev PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://pdbe.org/2dev PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dev ProSAT], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dev_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dev_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dev ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 23:51, 11 September 2015

2015-09-11T23:51:56Z

← Older revision		Revision as of 23:51, 11 September 2015
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	<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://pdbe.org/2dev PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Thermus thermophilus~~]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Inagaki, E]]		[[Category: Inagaki, E]]
	[[Category: Nakano, N]]		[[Category: Nakano, N]]

OCA at 21:03, 25 December 2014

2014-12-25T21:03:28Z

← Older revision		Revision as of 21:03, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Inagaki, E.]]		[[Category: Inagaki, E]]
	[[Category: Nakano, N.]]		[[Category: Nakano, N]]
	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]		[[Category: Structural genomic]]
	[[Category: Shinkai, A.]]		[[Category: Shinkai, A]]
	[[Category: Yokoyama, S.]]		[[Category: Yokoyama, S]]
	[[Category: Cesium ion]]		[[Category: Cesium ion]]
	[[Category: Dodecamer]]		[[Category: Dodecamer]]
Line 30:		Line 30:
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	[[Category: Rsgi]]		[[Category: Rsgi]]
	~~[[Category: Structural genomic]]~~
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 00:06, 30 September 2014

2014-09-30T00:06:06Z

← Older revision		Revision as of 00:06, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2dev.png\|left\|200px]]~~		==Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions==
			<StructureSection load='2dev' size='340' side='right' caption='[[2dev]], [[Resolution\|resolution]] 2.45Å' scene=''>
	~~{{STRUCTURE_2dev\| PDB=2dev \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DEV FirstGlance]. <br>
	===Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz8\|2cz8]], [[2deg\|2deg]], [[2deh\|2deh]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dev FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dev OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dev RCSB], [http://www.ebi.ac.uk/pdbsum/2dev PDBsum], [http://www.topsan.org/Proteins/RSGI/2dev TOPSAN]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dev_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Inagaki, E.]]		[[Category: Inagaki, E.]]

OCA: Protected "2dev" [edit=sysop:move=sysop]

2013-01-06T09:32:50Z

Protected "2dev" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:32, 6 January 2013
(No difference)

OCA at 09:32, 6 January 2013

2013-01-06T09:32:46Z

← Older revision		Revision as of 09:32, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2dev.png\|left\|200px]]		[[Image:2dev.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2dev", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
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	{{STRUCTURE_2dev\| PDB=2dev \| SCENE= }}		{{STRUCTURE_2dev\| PDB=2dev \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~2DEV~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].		[[2dev]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Inagaki, E.]]		[[Category: Inagaki, E.]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
			[[Category: Unknown function]]
	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 15:08:54 2008''~~

OCA at 13:08, 16 November 2008

2008-11-16T13:08:56Z

← Older revision		Revision as of 13:08, 16 November 2008
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	==About this Structure==		==About this Structure==
	2DEV is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].		2DEV is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEV OCA].
	~~[[Category: Single protein]]~~
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Inagaki, E.]]		[[Category: Inagaki, E.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 23~~:38:30 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:08:54 2008''