2df5 - Revision history

OCA at 08:26, 25 October 2023

2023-10-25T08:26:18Z

← Older revision		Revision as of 08:26, 25 October 2023
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	<StructureSection load='2df5' size='340' side='right'caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2df5' size='340' side='right'caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43587 Atcc 43587~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1iof\|1iof]]</div></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyroglutamyl~~-~~peptidase_I Pyroglutamyl-peptidase I]~~, ~~with EC number~~ [~~https://www~~.~~brenda-enzymes.info/php/result_flat.php4?ecno=~~3~~.4.19.3 3.4.19.3] </span>~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [https://pdbe.org/2df5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [https://www.ebi.ac.uk/pdbsum/2df5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2df5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [https://pdbe.org/2df5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [https://www.ebi.ac.uk/pdbsum/2df5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2df5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/PCP_PYRFU PCP_PYRFU]] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]		[https://www.uniprot.org/uniprot/PCP_PYRFU PCP_PYRFU] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Atcc 43587]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Pyroglutamyl-peptidase I]]~~
	~~[[Category: Chon, H]]~~
	~~[[Category: Kanaya, S]]~~
	~~[[Category: Katagiri, Y]]~~
	~~[[Category: Koga, Y]]~~
	~~[[Category: Matsumura, H]]~~
	~~[[Category: Takano, K]]~~
	~~[[Category: Chameleon sequence]]~~
	~~[[Category: Hydrolase]]~~
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: ~~Pyrrolidone carboxyl peptidase~~]]		[[Category: Chon H]]
			[[Category: Kanaya S]]
			[[Category: Katagiri Y]]
			[[Category: Koga Y]]
			[[Category: Matsumura H]]
			[[Category: Takano K]]

OCA at 10:30, 8 December 2021

2021-12-08T10:30:55Z

← Older revision		Revision as of 10:30, 8 December 2021
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	<StructureSection load='2df5' size='340' side='right'caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2df5' size='340' side='right'caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1iof\|1iof]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [~~http~~://pdbe.org/2df5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2df5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2df5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [https://pdbe.org/2df5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [https://www.ebi.ac.uk/pdbsum/2df5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2df5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/PCP_PYRFU PCP_PYRFU]] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]		[[https://www.uniprot.org/uniprot/PCP_PYRFU PCP_PYRFU]] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</div>		</div>
	<div class="pdbe-citations 2df5" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2df5" style="background-color:#fffaf0;"></div>

	~~==See Also==~~
	*[[Journal:Acta Cryst D:S2059798319000676\|Journal:Acta Cryst D:S2059798319000676]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:51, 4 March 2020

2020-03-04T07:51:55Z

← Older revision		Revision as of 07:51, 4 March 2020
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	==Crystal Structure of Pf-PCP(1-204)-C==		==Crystal Structure of Pf-PCP(1-204)-C==
	<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2df5' size='340' side='right'caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 2df5" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2df5" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Journal:Acta Cryst D:S2059798319000676\|Journal:Acta Cryst D:S2059798319000676]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 43587]]		[[Category: Atcc 43587]]
			[[Category: Large Structures]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]
	[[Category: Chon, H]]		[[Category: Chon, H]]

OCA at 06:41, 30 May 2018

2018-05-30T06:41:53Z

← Older revision		Revision as of 06:41, 30 May 2018
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	==Crystal Structure of Pf-PCP(1-204)-C==		==Crystal Structure of Pf-PCP(1-204)-C==
	<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
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	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://pdbe.org/2df5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://pdbe.org/2df5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2df5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2df5_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2df5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2df5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:46, 12 September 2015

2015-09-12T01:46:27Z

← Older revision		Revision as of 01:46, 12 September 2015
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	<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_furiosus Pyrococcus furiosus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://pdbe.org/2df5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2df5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Pyrococcus furiosus~~]]		[[Category: Atcc 43587]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]
	[[Category: Chon, H]]		[[Category: Chon, H]]
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	[[Category: Chameleon sequence]]		[[Category: Chameleon sequence]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
			[[Category: Pyrococcus furiosus]]
	[[Category: Pyrrolidone carboxyl peptidase]]		[[Category: Pyrrolidone carboxyl peptidase]]

OCA at 22:12, 25 December 2014

2014-12-25T22:12:57Z

← Older revision		Revision as of 22:12, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/PCP_PYRFU PCP_PYRFU]] Removes 5-oxoproline from various penultimate amino acid residues except L-proline.[HAMAP-Rule:MF_00417]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]
	[[Category: Chon, H.]]		[[Category: Chon, H]]
	[[Category: Kanaya, S.]]		[[Category: Kanaya, S]]
	[[Category: Katagiri, Y.]]		[[Category: Katagiri, Y]]
	[[Category: Koga, Y.]]		[[Category: Koga, Y]]
	[[Category: Matsumura, H.]]		[[Category: Matsumura, H]]
	[[Category: Takano, K.]]		[[Category: Takano, K]]
	[[Category: Chameleon sequence]]		[[Category: Chameleon sequence]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	~~[[Category: Pyrococcus furiosus]]~~
	[[Category: Pyrrolidone carboxyl peptidase]]		[[Category: Pyrrolidone carboxyl peptidase]]

OCA at 02:03, 30 September 2014

2014-09-30T02:03:18Z

← Older revision		Revision as of 02:03, 30 September 2014
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	[[Image:~~2df5~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal Structure of Pf-PCP(1-204)-C==
			<StructureSection load='2df5' size='340' side='right' caption='[[2df5]], [[Resolution\|resolution]] 2.30Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DF5 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1iof\|1iof]]</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2df5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2df5 RCSB], [http://www.ebi.ac.uk/pdbsum/2df5 PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2df5_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Certain sequences, known as chameleon sequences, take both alpha- and beta-conformations in natural proteins. We demonstrate that a wild chameleon sequence fused to the C-terminal alpha-helix or beta-sheet in foreign stable proteins from hyperthermophiles forms the same conformation as the host secondary structure. However, no secondary structural formation is observed when the sequence is attached to the outside of the secondary structure. These results indicate that this sequence inherently possesses an ability to make either alpha- or beta-conformation, depending on the sequentially neighboring secondary structure if little other nonlocal interaction occurs. Thus, chameleon sequences take on a satellite state through contagion by the power of a secondary structure. We propose this "conformational contagion" as a new nonlocal determinant factor in protein structure and misfolding related to protein conformational diseases.

	~~{{STRUCTURE_2df5\| PDB=2df5 \| SCENE= }}~~		Conformational contagion in a protein: structural properties of a chameleon sequence.,Takano K, Katagiri Y, Mukaiyama A, Chon H, Matsumura H, Koga Y, Kanaya S Proteins. 2007 Aug 15;68(3):617-25. PMID:17510955<ref>PMID:17510955</ref>

	~~===Crystal Structure~~ of ~~Pf-PCP(1-204)-C===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_17510955}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2df5]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:017510955<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]

OCA: Protected "2df5" [edit=sysop:move=sysop]

2013-01-06T11:16:37Z

Protected "2df5" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:16, 6 January 2013
(No difference)

OCA at 11:16, 6 January 2013

2013-01-06T11:16:35Z

← Older revision		Revision as of 11:16, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2df5.png\|left\|200px]]		[[Image:2df5.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2df5", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2df5\| PDB=2df5 \| SCENE= }}		{{STRUCTURE_2df5\| PDB=2df5 \| SCENE= }}

	===Crystal Structure of Pf-PCP(1-204)-C===		===Crystal Structure of Pf-PCP(1-204)-C===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_17510955}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 17510955 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_17510955}}		{{ABSTRACT_PUBMED_17510955}}

	==About this Structure==		==About this Structure==
	~~2DF5~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA].		[[2df5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~17510955~~</ref><references group="xtra"/>		<ref group="xtra">PMID:017510955</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]
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	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Pyrrolidone carboxyl peptidase]]		[[Category: Pyrrolidone carboxyl peptidase]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:26:54 2009''~~

OCA at 07:26, 18 February 2009

2009-02-18T07:26:56Z

← Older revision		Revision as of 07:26, 18 February 2009
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	==About this Structure==		==About this Structure==
	2DF5 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA].		2DF5 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF5 OCA].

	==Reference==		==Reference==
	~~Conformational contagion in a protein: structural properties of a chameleon sequence., Takano K, Katagiri Y, Mukaiyama A, Chon H, Matsumura H, Koga Y, Kanaya S, Proteins. 2007 Aug 15;68(3):617-25.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~17510955 17510955]~~		<ref group="xtra">PMID:17510955</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Pyroglutamyl-peptidase I]]		[[Category: Pyroglutamyl-peptidase I]]
	~~[[Category: Single protein]]~~
	[[Category: Chon, H.]]		[[Category: Chon, H.]]
	[[Category: Kanaya, S.]]		[[Category: Kanaya, S.]]
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	[[Category: Pyrrolidone carboxyl peptidase]]		[[Category: Pyrrolidone carboxyl peptidase]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 15~~:42:~~47 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:26:54 2009''