2dnt - Revision history

OCA at 18:45, 29 May 2024

2024-05-29T18:45:12Z

← Older revision		Revision as of 18:45, 29 May 2024
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	==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==		==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==
	<StructureSection load='2dnt' size='340' side='right'caption='[[2dnt~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>		<StructureSection load='2dnt' size='340' side='right'caption='[[2dnt]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [https://pdbe.org/2dnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [https://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnt ProSAT], [https://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [https://pdbe.org/2dnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [https://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnt ProSAT], [https://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/~~CDYL1_HUMAN CDYL1_HUMAN]~~] Acts as ~~repressor~~ of ~~transcription~~ (By similarity). ~~Has~~ histone ~~acetyltransferase activity~~, ~~with~~ a ~~preference for~~ histone H4.<ref>PMID:~~12072557~~</ref>		[https://www.uniprot.org/uniprot/CDYL_HUMAN CDYL_HUMAN] Chromatin reader protein that recognizes and binds histone H3 trimethylated at 'Lys-9', dimethylated at 'Lys-27' and trimethylated at 'Lys-27' (H3K9me3, H3K27me2 and H3K27me3, respectively) (PubMed:19808672, PubMed:28402439). Part of multimeric repressive chromatin complexes, where it is required for transmission and restoration of repressive histone marks, thereby preserving the epigenetic landscape (PubMed:28402439). Required for chromatin targeting and maximal enzymatic activity of Polycomb repressive complex 2 (PRC2); acts as a positive regulator of PRC2 activity by bridging the pre-existing histone H3K27me3 and newly recruited PRC2 on neighboring nucleosomes (PubMed:22009739). Acts as a corepressor for REST by facilitating histone-lysine N-methyltransferase EHMT2 recruitment and H3K9 dimethylation at REST target genes for repression (PubMed:19061646). Involved in X chromosome inactivation in females: recruited to Xist RNA-coated X chromosome and facilitates propagation of H3K9me2 by anchoring EHMT2 (By similarity). Promotes EZH2 accumulation and H3K27me3 methylation at DNA double strand breaks (DSBs), thereby facilitating transcriptional repression at sites of DNA damage and homology-directed repair of DSBs (PubMed:29177481). Required for neuronal migration during brain development by repressing expression of RHOA (By similarity). By repressing the expression of SCN8A, contributes to the inhibition of intrinsic neuronal excitability and epileptogenesis (By similarity). In addition to acting as a chromatin reader, acts as a hydro-lyase (PubMed:28803779). Shows crotonyl-coA hydratase activity by mediating the conversion of crotonyl-CoA ((2E)-butenoyl-CoA) to beta-hydroxybutyryl-CoA (3-hydroxybutanoyl-CoA), thereby acting as a negative regulator of histone crotonylation (PubMed:28803779). Histone crotonylation is required during spermatogenesis; down-regulation of histone crotonylation by CDYL regulates the reactivation of sex chromosome-linked genes in round spermatids and histone replacement in elongating spermatids (By similarity). By regulating histone crotonylation and trimethylation of H3K27, may be involved in stress-induced depression-like behaviors, possibly by regulating VGF expression (By similarity).[UniProtKB:Q9WTK2]<ref>PMID:19061646</ref> <ref>PMID:19808672</ref> <ref>PMID:22009739</ref> <ref>PMID:28402439</ref> <ref>PMID:28803779</ref> <ref>PMID:29177481</ref> Not able to recognize and bind histone H3K9me3, histone H3K27me2 and histone H3K27me3, due to the presence of a N-terminal extension that inactivates the chromo domain (PubMed:19808672).<ref>PMID:19808672</ref> Not able to recognize and bind histone H3K9me3, histone H3K27me2 and histone H3K27me3, due to the absence of the chromo domain (PubMed:19808672). Acts as a negative regulator of isoform 2 by displacing isoform 2 from chromatin.<ref>PMID:19808672</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Human~~]]		[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Hirota, H]]		[[Category: Hirota H]]
	[[Category: Izumi, K]]		[[Category: Izumi K]]
	[[Category: Momen~~, A Z.M Ruhul]]~~		[[Category: Ruhul Momen AZM]]
	~~[[Category: Structural genomic~~]]		[[Category: Yokoyama S]]
	[[Category: Yokoyama, S]]		[[Category: Yoshida M]]
	[[Category: Yoshida, M]]
	~~[[Category: Choromatin organization modifier]]~~
	~~[[Category: Chromo domain]]~~
	~~[[Category: Histone h3 tail]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Rsgi]]~~
	~~[[Category: Structural protein~~]]

OCA at 10:33, 8 December 2021

2021-12-08T10:33:08Z

← Older revision		Revision as of 10:33, 8 December 2021
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	<StructureSection load='2dnt' size='340' side='right'caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2dnt' size='340' side='right'caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [~~http~~://pdbe.org/2dnt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnt ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [https://pdbe.org/2dnt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [https://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnt ProSAT], [https://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/CDYL1_HUMAN CDYL1_HUMAN]] Acts as repressor of transcription (By similarity). Has histone acetyltransferase activity, with a preference for histone H4.<ref>PMID:12072557</ref>		[[https://www.uniprot.org/uniprot/CDYL1_HUMAN CDYL1_HUMAN]] Acts as repressor of transcription (By similarity). Has histone acetyltransferase activity, with a preference for histone H4.<ref>PMID:12072557</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:55, 4 March 2020

2020-03-04T07:55:19Z

← Older revision		Revision as of 07:55, 4 March 2020
Line 1:		Line 1:

	==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==		==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==
	<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2dnt' size='340' side='right'caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
			[[Category: Large Structures]]
	[[Category: Hirota, H]]		[[Category: Hirota, H]]
	[[Category: Izumi, K]]		[[Category: Izumi, K]]

OCA at 06:47, 30 May 2018

2018-05-30T06:47:42Z

← Older revision		Revision as of 06:47, 30 May 2018
Line 1:		Line 1:

	==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==		==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==
	<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://pdbe.org/2dnt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://pdbe.org/2dnt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dnt ProSAT], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/2dnt_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/2dnt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dnt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 12:29, 11 September 2015

2015-09-11T12:29:40Z

← Older revision		Revision as of 12:29, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://pdbe.org/2dnt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Homo sapiens~~]]		[[Category: Human]]
	[[Category: Hirota, H]]		[[Category: Hirota, H]]
	[[Category: Izumi, K]]		[[Category: Izumi, K]]

OCA at 16:27, 25 December 2014

2014-12-25T16:27:53Z

← Older revision		Revision as of 16:27, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/CDYL1_HUMAN CDYL1_HUMAN]] Acts as repressor of transcription (By similarity). Has histone acetyltransferase activity, with a preference for histone H4.<ref>PMID:12072557</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 15:		Line 17:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Hirota, H.]]		[[Category: Hirota, H]]
	[[Category: Izumi, K.]]		[[Category: Izumi, K]]
	[[Category: Momen, A Z.M Ruhul.]]		[[Category: Momen, A Z.M Ruhul]]
	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]		[[Category: Structural genomic]]
	[[Category: Yokoyama, S.]]		[[Category: Yokoyama, S]]
	[[Category: Yoshida, M.]]		[[Category: Yoshida, M]]
	[[Category: Choromatin organization modifier]]		[[Category: Choromatin organization modifier]]
	[[Category: Chromo domain]]		[[Category: Chromo domain]]
Line 29:		Line 33:
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	[[Category: Rsgi]]		[[Category: Rsgi]]
	~~[[Category: Structural genomic]]~~
	[[Category: Structural protein]]		[[Category: Structural protein]]

OCA at 02:08, 30 September 2014

2014-09-30T02:08:42Z

← Older revision		Revision as of 02:08, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2dnt.png\|left\|200px]]~~		==Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA==
			<StructureSection load='2dnt' size='340' side='right' caption='[[2dnt]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	~~{{STRUCTURE_2dnt\| PDB=2dnt \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DNT FirstGlance]. <br>
	===Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA===		</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dnt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dnt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dnt RCSB], [http://www.ebi.ac.uk/pdbsum/2dnt PDBsum], [http://www.topsan.org/Proteins/RSGI/2dnt TOPSAN]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
	==~~About this Structure~~==		[[Image:Consurf_key_small.gif\|200px\|right]]
	[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA].		Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/2dnt_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Hirota, H.]]		[[Category: Hirota, H.]]

OCA: Protected "2dnt" [edit=sysop:move=sysop]

2013-01-06T11:21:40Z

Protected "2dnt" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:21, 6 January 2013
(No difference)

OCA at 11:21, 6 January 2013

2013-01-06T11:21:36Z

← Older revision		Revision as of 11:21, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2dnt.png\|left\|200px]]		[[Image:2dnt.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2dnt", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2dnt\| PDB=2dnt \| SCENE= }}		{{STRUCTURE_2dnt\| PDB=2dnt \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~2DNT~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA].		[[2dnt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA].
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Hirota, H.]]		[[Category: Hirota, H.]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
			[[Category: Structural protein]]
	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 13:00:01 2008''~~

OCA at 11:00, 16 November 2008

2008-11-16T11:00:03Z

← Older revision		Revision as of 11:00, 16 November 2008
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	==About this Structure==		==About this Structure==
	2DNT is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA].		2DNT is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNT OCA].
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	~~[[Category: Single protein]]~~
	[[Category: Hirota, H.]]		[[Category: Hirota, H.]]
	[[Category: Izumi, K.]]		[[Category: Izumi, K.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 19~~:41:28 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:00:01 2008''