2dot - Revision history

OCA at 10:33, 8 December 2021

2021-12-08T10:33:23Z

← Older revision		Revision as of 10:33, 8 December 2021
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	<StructureSection load='2dot' size='340' side='right'caption='[[2dot]]' scene=''>		<StructureSection load='2dot' size='340' side='right'caption='[[2dot]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DOT FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DOT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=2dot FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/2dot PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dot ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dot FirstGlance], [https://www.ebi.ac.uk/pdbsum/2dot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dot ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:54, 4 March 2020

2020-03-04T07:54:49Z

← Older revision		Revision as of 07:54, 4 March 2020
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	==STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION==		==STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION==
	<StructureSection load='2dot' size='340' side='right' caption='[[2dot]]' scene=''>		<StructureSection load='2dot' size='340' side='right'caption='[[2dot]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
			[[Category: Large Structures]]
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA at 06:47, 30 May 2018

2018-05-30T06:47:09Z

← Older revision		Revision as of 06:47, 30 May 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dot FirstGlance], [http://www.ebi.ac.uk/pdbsum/2dot PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dot FirstGlance], [http://www.ebi.ac.uk/pdbsum/2dot PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dot ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:30, 11 February 2016

2016-02-11T10:30:42Z

← Older revision		Revision as of 10:30, 11 February 2016
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			{{Theoretical_model}}

	==STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION==		==STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION==
	<StructureSection load='2dot' size='340' side='right' caption='[[2dot]]' scene=''>		<StructureSection load='2dot' size='340' side='right' caption='[[2dot]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Theoretical Model]]
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA at 08:04, 10 September 2015

2015-09-10T08:04:38Z

← Older revision		Revision as of 08:04, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2dot" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:26, 15 January 2015

2015-01-15T18:26:54Z

← Older revision		Revision as of 18:26, 15 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dot FirstGlance], [http://www.ebi.ac.uk/pdbsum/2dot PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dot FirstGlance], [http://www.ebi.ac.uk/pdbsum/2dot PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 05:21, 29 September 2014

2014-09-29T05:21:08Z

← Older revision		Revision as of 05:21, 29 September 2014
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	~~{{Theoretical_model}}~~		==STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION==
			<StructureSection load='2dot' size='340' side='right' caption='[[2dot]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DOT FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dot FirstGlance], [http://www.ebi.ac.uk/pdbsum/2dot PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Microbial redox reactions involving inorganic sulfur compounds, mainly the sulfur anions, are one of the vital reactions responsible for the environmental sulfur balance. These reactions are mediated by phylogenetically diverse prokaryotes, some of which also take part in the extraction of metal ions from their sulfur containing ores. These sulfur oxidizers oxidize inorganic sulfur compounds like sulfide, thiosulfate etc. to produce reductants that are used for carbon dioxide fixation or in respiratory electron transfer chains. The sulfur oxidizing gene cluster (sox) of alpha-Proteobacteria comprises of at least 15 genes, forming two transcriptional units, viz., soxSR and soxVWXYZABCDEFGH. SoxV is known to be a CcdA homolog involved in the transport of reductants from cytoplasm to periplasm. SoxW and SoxS are periplasmic thioredoxins, which (SoxW) interact with SoxV and thereby help in the redox reactions. We have employed homology modeling to construct the three-dimensional structures of the SoxV, SoxW and SoxS proteins from Rhodovulum sulfidophilum. With the help of docking and molecular dynamics simulations we have identified the amino acid residues of these proteins involved in the interaction. The probable biochemical mechanism of the transport of reductants through the interactions of these proteins has also been investigated. Our study provides a rational basis to interpret the molecular mechanism of the biochemistry of sulfur anion oxidation reactions by these ecologically important organisms.

	~~[[Image~~:~~2dot~~.~~png\|left\|200px]]~~		Structural insight into the interactions of SoxV, SoxW and SoxS in the process of transport of reductants during sulfur oxidation by the novel global sulfur oxidation reaction cycle.,Bagchi A, Ghosh TC Biophys Chem. 2006 Jan 1;119(1):7-13. Epub 2005 Sep 23. PMID:16183190<ref>PMID:16183190</ref>

	~~{{STRUCTURE_2dot\| PDB=2dot \| SCENE= }}~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~===STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION===~~		== References ==
			<references/>
	~~{{ABSTRACT_PUBMED_16183190}}~~		__TOC__
			</StructureSection>
	==~~Reference~~==
	<~~ref group="xtra">PMID:016183190<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

OCA: Protected "2dot" [edit=sysop:move=sysop]

2012-10-21T09:58:52Z

Protected "2dot" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:58, 21 October 2012
(No difference)

OCA at 09:58, 21 October 2012

2012-10-21T09:58:47Z

← Older revision		Revision as of 09:58, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
	~~{{Seed}}~~
	[[Image:2dot.png\|left\|200px]]		[[Image:2dot.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2dot", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2dot\| PDB=2dot \| SCENE= }}		{{STRUCTURE_2dot\| PDB=2dot \| SCENE= }}

	===STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION===		===STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_16183190}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 16183190 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_16183190}}		{{ABSTRACT_PUBMED_16183190}}

	~~==About this Structure==~~
	~~Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DOT OCA].~~

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~16183190~~</ref><references group="xtra"/>		<ref group="xtra">PMID:016183190</ref><references group="xtra"/>
	[[Category: Bagchi, A]]		[[Category: Bagchi, A]]
	[[Category: Ghosh, T C]]		[[Category: Ghosh, T C]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 09:19:42 2010''~~

OCA at 06:19, 8 April 2010

2010-04-08T06:19:42Z

@@ Line 1: / Line 1: @@
-'''Theoretical Model'''
+{{Theoretical_model}}
-The entry 2DOT is a Theoretical Model titled 'Structural identification of a novel thioredoxin SoxW involved in sulfur oxidation'.
+<!--
-[[Category:Theoretical Model]]
+===STRUCTURAL IDENTIFICATION OF A NOVEL THIOREDOXIN SOXW INVOLVED IN SULFUR OXIDATION===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 30 09:56:14 2008''
+<!--