2ef8 - Revision history

OCA at 00:53, 21 November 2024

2024-11-21T00:53:28Z

← Older revision		Revision as of 00:53, 21 November 2024
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	<StructureSection load='2ef8' size='340' side='right'caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2ef8' size='340' side='right'caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpp2 Bpp2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P2 Escherichia virus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene><~~/td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">ecoT38IC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [https://pdbe.org/2ef8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ef8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [https://pdbe.org/2ef8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ef8 ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q83VS9_9CAUD Q83VS9_9CAUD]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2ef8_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2ef8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bpp2~~]]		[[Category: Escherichia virus P2]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Kawanishi, Y]]		[[Category: Kawanishi Y]]
	[[Category: Kita, K]]		[[Category: Kita K]]
	[[Category: Mikami, B]]		[[Category: Mikami B]]
	~~[[Category: Dna binding protein]]~~
	~~[[Category: Helix-turn-helix]]~~
	~~[[Category: Transcription regulator~~]]

OCA at 12:04, 10 February 2021

2021-02-10T12:04:23Z

← Older revision		Revision as of 12:04, 10 February 2021
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	==Crystal structure of C.EcoT38IS==		==Crystal structure of C.EcoT38IS==
	<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2ef8' size='340' side='right'caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpp2 Bpp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpp2 Bpp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [~~http~~://pdbe.org/2ef8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ef8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [https://pdbe.org/2ef8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [https://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ef8 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Bpp2]]		[[Category: Bpp2]]
			[[Category: Large Structures]]
	[[Category: Kawanishi, Y]]		[[Category: Kawanishi, Y]]
	[[Category: Kita, K]]		[[Category: Kita, K]]

OCA at 06:31, 6 June 2018

2018-06-06T06:31:52Z

← Older revision		Revision as of 06:31, 6 June 2018
Line 1:		Line 1:

	==Crystal structure of C.EcoT38IS==		==Crystal structure of C.EcoT38IS==
	<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://pdbe.org/2ef8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://pdbe.org/2ef8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ef8 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2ef8_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2ef8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ef8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 15:45, 11 September 2015

2015-09-11T15:45:45Z

← Older revision		Revision as of 15:45, 11 September 2015
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	<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_p2 Enterobacteria phage p2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpp2 Bpp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 ~~Enterobacteria phage P2~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 BPP2])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://pdbe.org/2ef8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Enterobacteria phage p2~~]]		[[Category: Bpp2]]
	[[Category: Kawanishi, Y]]		[[Category: Kawanishi, Y]]
	[[Category: Kita, K]]		[[Category: Kita, K]]

OCA at 17:28, 15 January 2015

2015-01-15T17:28:03Z

← Older revision		Revision as of 17:28, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 Enterobacteria phage P2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 Enterobacteria phage P2])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage p2]]		[[Category: Enterobacteria phage p2]]
	[[Category: Kawanishi, Y.]]		[[Category: Kawanishi, Y]]
	[[Category: Kita, K.]]		[[Category: Kita, K]]
	[[Category: Mikami, B.]]		[[Category: Mikami, B]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Helix-turn-helix]]		[[Category: Helix-turn-helix]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

OCA at 02:21, 30 September 2014

2014-09-30T02:21:57Z

← Older revision		Revision as of 02:21, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2ef8.png\|left\|200px]]~~		==Crystal structure of C.EcoT38IS==
			<StructureSection load='2ef8' size='340' side='right' caption='[[2ef8]], [[Resolution\|resolution]] 1.95Å' scene=''>
	~~{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EF8 FirstGlance]. <br>
	===Crystal structure of C.EcoT38IS===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ecoT38IC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 Enterobacteria phage P2])</td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum]</span></td></tr>
	[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2ef8_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Enterobacteria phage p2]]		[[Category: Enterobacteria phage p2]]
	[[Category: Kawanishi, Y.]]		[[Category: Kawanishi, Y.]]

OCA: Protected "2ef8" [edit=sysop:move=sysop]

2013-01-06T11:34:41Z

Protected "2ef8" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:34, 6 January 2013
(No difference)

OCA at 11:34, 6 January 2013

2013-01-06T11:34:39Z

← Older revision		Revision as of 11:34, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2ef8.png\|left\|200px]]		[[Image:2ef8.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2ef8", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}		{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~2EF8~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA].		[[2ef8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA].
	[[Category: Enterobacteria phage p2]]		[[Category: Enterobacteria phage p2]]
	[[Category: Kawanishi, Y.]]		[[Category: Kawanishi, Y.]]
Line 22:		Line 15:
	[[Category: Helix-turn-helix]]		[[Category: Helix-turn-helix]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:38:20 2009''~~

OCA at 00:38, 18 February 2009

2009-02-18T00:38:22Z

← Older revision		Revision as of 00:38, 18 February 2009
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	[[Image:2ef8.~~jpg~~\|left\|200px]]		{{Seed}}
			[[Image:2ef8.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}		{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}

	~~'''~~Crystal structure of C.EcoT38IS~~'''~~		===Crystal structure of C.EcoT38IS===


	==About this Structure==		==About this Structure==
	2EF8 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA].		2EF8 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p2 Enterobacteria phage p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EF8 OCA].
	[[Category: Enterobacteria phage p2]]		[[Category: Enterobacteria phage p2]]
	~~[[Category: Single protein]]~~
	[[Category: Kawanishi, Y.]]		[[Category: Kawanishi, Y.]]
	[[Category: Kita, K.]]		[[Category: Kita, K.]]
Line 22:		Line 22:
	[[Category: Helix-turn-helix]]		[[Category: Helix-turn-helix]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4~~ 02:27:~~36 2008~~''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:38:20 2009''

OCA at 23:27, 3 May 2008

2008-05-03T23:27:38Z

← Older revision		Revision as of 23:27, 3 May 2008
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	[[Image:2ef8.jpg\|left\|200px]]		[[Image:2ef8.jpg\|left\|200px]]

	~~{{Structure~~		<!--
	~~\|PDB= 2ef8 \|SIZE=350\|CAPTION= <scene name='initialview01'>2ef8</scene>~~, ~~resolution 1~~.~~95Å~~		The line below this paragraph, containing "STRUCTURE_2ef8", creates the "Structure Box" on the page.
	~~\|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+401'>AC1</scene>~~		You may change the PDB parameter (which sets the PDB file loaded into the applet)
	~~\|LIGAND= <~~scene ~~name='pdbligand=CME:S,S-(2-HYDROXYETHYL~~)~~THIOCYSTEINE'>CME</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~		or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
	~~\|ACTIVITY=~~		or leave the SCENE parameter empty for the default display.
	~~\|GENE= ecoT38IC ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10679 Enterobacteria phage P2])~~		-->
	~~\|DOMAIN=~~		{{STRUCTURE_2ef8\| PDB=2ef8 \| SCENE= }}
	\|~~RELATEDENTRY~~=
	\|~~RESOURCES~~=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ef8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ef8 OCA], [http://www.ebi.ac.uk/pdbsum/2ef8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ef8 RCSB]</span>
	}}

	'''Crystal structure of C.EcoT38IS'''		'''Crystal structure of C.EcoT38IS'''
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	[[Category: Kita, K.]]		[[Category: Kita, K.]]
	[[Category: Mikami, B.]]		[[Category: Mikami, B.]]
	[[Category: ~~dna~~ binding protein]]		[[Category: Dna binding protein]]
	[[Category: ~~helix~~-turn-helix]]		[[Category: Helix-turn-helix]]
	[[Category: ~~transcription~~ regulator]]		[[Category: Transcription regulator]]
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 02:27:36 2008''
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31~~ 02:48:14 2008''