2efv - Revision history

OCA at 13:49, 13 March 2024

2024-03-13T13:49:44Z

← Older revision		Revision as of 13:49, 13 March 2024
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	<StructureSection load='2efv' size='340' side='right'caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2efv' size='340' side='right'caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Metja Metja~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EFV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EFV FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~mj0366 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [https://pdbe.org/2efv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [https://www.ebi.ac.uk/pdbsum/2efv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2efv ProSAT], [https://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [https://pdbe.org/2efv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [https://www.ebi.ac.uk/pdbsum/2efv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2efv ProSAT], [https://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Y366_METJA Y366_METJA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2efv ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2efv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	The crystal structure of a hypothetical protein MJ0366, derived from Methanocaldococcus jannaschii was solved at 1.9 A resolution using synchrotron radiation. MJ0366 was crystallized as a monomer and has knot structural arrangement. Intriguingly, the solved structure consists of novel 'KNOT' fold conformation. The 31 trefoil knot was observed in the structure. The N-terminal and C-terminal ends did not participate in knot formation.

	Crystal structure analysis of a hypothetical protein (MJ0366) from Methanocaldococcus jannaschii revealed a novel topological arrangement of the knot fold.,Thiruselvam V, Kumarevel T, Karthe P, Kuramitsu S, Yokoyama S, Ponnuswamy MN Biochem Biophys Res Commun. 2017 Jan 8;482(2):264-269. doi:, 10.1016/j.bbrc.2016.11.052. Epub 2016 Nov 12. PMID:27845039<ref>PMID:27845039</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 2efv" style="background-color:#fffaf0;"></div>~~
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Metja~~]]		[[Category: Methanocaldococcus jannaschii DSM 2661]]
	[[Category: Karthe, P]]		[[Category: Karthe P]]
	[[Category: Kumarevel~~, T S~~]]		[[Category: Kumarevel TS]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu S]]
	~~[[Category: Structural genomic~~]]		[[Category: Yokoyama S]]
	[[Category: Yokoyama, S]]
	~~[[Category: Hypothetical protein]]~~
	~~[[Category: Methanocaldococcus jannaschii dsm 2661]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Rsgi]]~~
	~~[[Category: Unknown function~~]]

OCA at 12:05, 10 February 2021

2021-02-10T12:05:10Z

← Older revision		Revision as of 12:05, 10 February 2021
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	==Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii==		==Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii==
	<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2efv' size='340' side='right'caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2EFV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EFV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [~~http~~://pdbe.org/2efv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2efv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2efv ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [https://pdbe.org/2efv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [https://www.ebi.ac.uk/pdbsum/2efv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2efv ProSAT], [https://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Metja]]		[[Category: Metja]]
	[[Category: Karthe, P]]		[[Category: Karthe, P]]

OCA at 12:18, 16 January 2019

2019-01-16T12:18:02Z

@@ Line 18: / Line 18: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2efv ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>

OCA at 07:05, 6 June 2018

2018-06-06T07:05:39Z

← Older revision		Revision as of 07:05, 6 June 2018
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	==Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii==		==Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii==
	<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://pdbe.org/2efv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://pdbe.org/2efv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2efv ProSAT], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2efv_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2efv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 17:18, 8 February 2016

2016-02-08T17:18:34Z

← Older revision		Revision as of 17:18, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2efv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 13:45, 10 September 2015

2015-09-10T13:45:36Z

← Older revision		Revision as of 13:45, 10 September 2015
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	<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EFV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EFV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 ~~Methanocaldococcus jannaschii DSM 2661~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://pdbe.org/2efv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Methanocaldococcus jannaschii dsm 2661~~]]		[[Category: Metja]]
	[[Category: Karthe, P]]		[[Category: Karthe, P]]
	[[Category: Kumarevel, T S]]		[[Category: Kumarevel, T S]]
Line 26:		Line 26:
	[[Category: Yokoyama, S]]		[[Category: Yokoyama, S]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
			[[Category: Methanocaldococcus jannaschii dsm 2661]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 00:56, 25 December 2014

2014-12-25T00:56:45Z

← Older revision		Revision as of 00:56, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EFV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EFV FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 Methanocaldococcus jannaschii DSM 2661])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 Methanocaldococcus jannaschii DSM 2661])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Methanocaldococcus jannaschii dsm 2661]]		[[Category: Methanocaldococcus jannaschii dsm 2661]]
	[[Category: Karthe, P.]]		[[Category: Karthe, P]]
	[[Category: Kumarevel, T S.]]		[[Category: Kumarevel, T S]]
	[[Category: Kuramitsu, S.]]		[[Category: Kuramitsu, S]]
	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]		[[Category: Structural genomic]]
	[[Category: Yokoyama, S.]]		[[Category: Yokoyama, S]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
	~~[[Category: Methanocaldococcus jannaschii dsm 2661]]~~
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	[[Category: Rsgi]]		[[Category: Rsgi]]
	~~[[Category: Structural genomic]]~~
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 00:25, 30 September 2014

2014-09-30T00:25:56Z

← Older revision		Revision as of 00:25, 30 September 2014
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	~~[[Image:2efv.png\|left\|200px]]~~		==Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii==
			<StructureSection load='2efv' size='340' side='right' caption='[[2efv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	~~{{STRUCTURE_2efv\| PDB=2efv \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EFV FirstGlance]. <br>
	===Crystal Structure of a Hypothetical Protein(MJ0366) from Methanocaldococcus jannaschii===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mj0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 Methanocaldococcus jannaschii DSM 2661])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2efv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2efv RCSB], [http://www.ebi.ac.uk/pdbsum/2efv PDBsum], [http://www.topsan.org/Proteins/RSGI/2efv TOPSAN]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2efv_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Methanocaldococcus jannaschii dsm 2661]]		[[Category: Methanocaldococcus jannaschii dsm 2661]]
	[[Category: Karthe, P.]]		[[Category: Karthe, P.]]

OCA: Protected "2efv" [edit=sysop:move=sysop]

2013-01-06T09:48:47Z

Protected "2efv" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:48, 6 January 2013
(No difference)

OCA at 09:48, 6 January 2013

2013-01-06T09:48:42Z

← Older revision		Revision as of 09:48, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2efv.png\|left\|200px]]		[[Image:2efv.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2efv", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2efv\| PDB=2efv \| SCENE= }}		{{STRUCTURE_2efv\| PDB=2efv \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~2EFV~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Methanocaldococcus_jannaschii~~ Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA].		[[2efv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFV OCA].
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii dsm 2661]]
	[[Category: Karthe, P.]]		[[Category: Karthe, P.]]
	[[Category: Kumarevel, T S.]]		[[Category: Kumarevel, T S.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:36:36 2008''~~