2elf - Revision history

OCA: Redirecting to 3wnb

2014-12-10T15:09:37Z

Redirecting to 3wnb

← Older revision		Revision as of 15:09, 10 December 2014
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	~~==Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei==~~		#REDIRECT [[3wnb]] This PDB entry is obsolete and replaced by 3wnb
	~~<StructureSection load='2elf' size='340' side='right' caption='~~[[~~2elf]], [[Resolution\|resolution]] 1.70Å' scene=''>~~
	~~== Structural highlights ==~~
	~~<table><tr><td colspan='2'>[[2elf~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ELF FirstGlance]. <br>
	~~</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene><br>~~
	~~<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-synthesizing_GTPase Protein-synthesizing GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.3 3.6.5.3] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2elf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2elf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2elf RCSB], [http://www.ebi.ac.uk/pdbsum/2elf PDBsum], [http://www.topsan.org/Proteins/RSGI/2elf TOPSAN]</span></td></tr>
	~~<table>~~
	~~== Evolutionary Conservation ==~~
	~~[[Image:Consurf_key_small.gif\|200px\|right]]~~
	~~Check<jmol>~~
	~~<jmolCheckbox>~~
	~~<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/el/2elf_consurf.spt"</scriptWhenChecked>~~
	~~<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>~~
	~~<text>to colour the structure~~ by ~~Evolutionary Conservation</text>~~
	~~</jmolCheckbox>~~
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	~~<div style="clear:both"></div>~~
	~~__TOC__~~
	~~</StructureSection>~~
	~~[[Category: Methanosarcina mazei]]~~
	~~[[Category: Protein-synthesizing GTPase]]~~
	~~[[Category: Fukunaga, R.]]~~
	~~[[Category: Ishii, R.]]~~
	~~[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]~~
	~~[[Category: Sengoku, T.]]~~
	~~[[Category: Yanagisawa, T.]]~~
	~~[[Category: Yokoyama, S.]]~~
	~~[[Category: Elongation factor]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Pyrrolysine]]~~
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	~~[[Category: Rsgi]]~~
	~~[[Category: Structural genomic]]~~
	~~[[Category: Translation]]~~
	~~[[Category: Trna]]~~

OCA at 01:12, 30 September 2014

2014-09-30T01:12:12Z

← Older revision		Revision as of 01:12, 30 September 2014
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	~~[[Image:2elf.png\|left\|200px]]~~		==Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei==
			<StructureSection load='2elf' size='340' side='right' caption='[[2elf]], [[Resolution\|resolution]] 1.70Å' scene=''>
	~~{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2elf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ELF FirstGlance]. <br>
	===Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene><br>
			<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-synthesizing_GTPase Protein-synthesizing GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.3 3.6.5.3] </span></td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2elf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2elf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2elf RCSB], [http://www.ebi.ac.uk/pdbsum/2elf PDBsum], [http://www.topsan.org/Proteins/RSGI/2elf TOPSAN]</span></td></tr>
	[[2elf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/el/2elf_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Methanosarcina mazei]]		[[Category: Methanosarcina mazei]]
	[[Category: Protein-synthesizing GTPase]]		[[Category: Protein-synthesizing GTPase]]

OCA: Protected "2elf" [edit=sysop:move=sysop]

2013-01-06T10:27:52Z

Protected "2elf" [edit=sysop:move=sysop]

← Older revision	Revision as of 10:27, 6 January 2013
(No difference)

OCA at 10:27, 6 January 2013

2013-01-06T10:27:45Z

← Older revision		Revision as of 10:27, 6 January 2013
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	~~{{Seed}}~~
	[[Image:2elf.png\|left\|200px]]		[[Image:2elf.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2elf", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}		{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~2ELF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA].		[[2elf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA].
	[[Category: Methanosarcina mazei]]		[[Category: Methanosarcina mazei]]
	[[Category: Protein-synthesizing GTPase]]		[[Category: Protein-synthesizing GTPase]]
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	[[Category: Translation]]		[[Category: Translation]]
	[[Category: Trna]]		[[Category: Trna]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:30:01 2008''~~

OCA at 14:30, 16 November 2008

2008-11-16T14:30:02Z

← Older revision		Revision as of 14:30, 16 November 2008
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	==About this Structure==		==About this Structure==
	2ELF is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA].		2ELF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ELF OCA].
	[[Category: Methanosarcina mazei]]		[[Category: Methanosarcina mazei]]
	[[Category: Protein-synthesizing GTPase]]		[[Category: Protein-synthesizing GTPase]]
	~~[[Category: Single protein]]~~
	[[Category: Fukunaga, R.]]		[[Category: Fukunaga, R.]]
	[[Category: Ishii, R.]]		[[Category: Ishii, R.]]
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	[[Category: Trna]]		[[Category: Trna]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 03~~:06:32 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:30:01 2008''

OCA at 00:06, 29 September 2008

2008-09-29T00:06:41Z

← Older revision		Revision as of 00:06, 29 September 2008
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	[[Image:2elf.~~jpg~~\|left\|200px]]		{{Seed}}
			[[Image:2elf.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}		{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}

	~~'''~~Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei~~'''~~		===Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei===


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	[[Category: Translation]]		[[Category: Translation]]
	[[Category: Trna]]		[[Category: Trna]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Apr 9 14~~:39:04 2008''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 03:06:32 2008''

OCA at 11:39, 9 April 2008

2008-04-09T11:39:05Z

← Older revision		Revision as of 11:39, 9 April 2008
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	[[Image:2elf.jpg\|left\|200px]]		[[Image:2elf.jpg\|left\|200px]]

	~~{{Structure~~		<!--
	~~\|PDB= 2elf \|SIZE=350\|CAPTION= <scene name='initialview01'>2elf</scene>~~, ~~resolution 1~~.~~70Å~~		The line below this paragraph, containing "STRUCTURE_2elf", creates the "Structure Box" on the page.
	~~\|SITE= <scene name='pdbsite=AC1:Cit+Binding+Site+For+Residue+A+1436'>AC1</scene>~~		You may change the PDB parameter (which sets the PDB file loaded into the applet)
	~~\|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</~~scene>, ~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~		or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
	~~\|ACTIVITY= <span class='plainlinks'>[http://en~~.~~wikipedia.org/wiki/Protein~~-~~synthesizing_GTPase Protein~~-~~synthesizing GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.3 3.6.5.3] </span~~>		or leave the SCENE parameter empty for the default display.
	\|~~GENE~~=		-->
	\|~~DOMAIN~~=~~<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03696 selB_II], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04171 SelB]</span>~~		{{STRUCTURE_2elf\| PDB=2elf \| SCENE= }}
	~~\|RELATEDENTRY=~~
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2elf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2elf OCA], [http://www.ebi.ac.uk/pdbsum/2elf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2elf RCSB]</span>
	}}

	'''Crystal structure of elongation factor Tu-~~like protein EFPyl~~ from Methanosarcina mazei'''		'''Crystal structure of the SelB-like elongation factor EF-Pyl from Methanosarcina mazei'''


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	[[Category: Yanagisawa, T.]]		[[Category: Yanagisawa, T.]]
	[[Category: Yokoyama, S.]]		[[Category: Yokoyama, S.]]
	[[Category: ~~elongation~~ factor]]		[[Category: Elongation factor]]
	[[Category: ~~national~~ project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: ~~nppsfa~~]]		[[Category: Nppsfa]]
	[[Category: ~~pyrrolysine~~]]		[[Category: Pyrrolysine]]
	[[Category: ~~riken~~ structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: ~~rsgi~~]]		[[Category: Rsgi]]
	[[Category: ~~structural~~ genomic]]		[[Category: Structural genomic]]
	[[Category: ~~translation~~]]		[[Category: Translation]]
	[[Category: ~~trna~~]]		[[Category: Trna]]
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 9 14:39:04 2008''
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr ~~2 11~~:56:32 2008''

OCA: New page: 200px {{Structure |PDB= 2elf |SIZE=350|CAPTION= 2elf, resolution 1.70Å |SITE=