2f0d - Revision history

OCA at 09:20, 14 February 2024

2024-02-14T09:20:34Z

← Older revision		Revision as of 09:20, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='2f0d' size='340' side='right'caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2f0d' size='340' side='right'caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus~~ aureus~~" (rosenbach 1884) zopf 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</div></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">nuc ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax~~.~~cgi?mode=Info&srchmode=~~5&~~id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>~~
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [https://pdbe.org/2f0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [https://www.ebi.ac.uk/pdbsum/2f0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f0d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [https://pdbe.org/2f0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [https://www.ebi.ac.uk/pdbsum/2f0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f0d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.		[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Micrococcal nuclease~~]]		[[Category: Staphylococcus aureus]]
	[[Category: Lu~~, J Z~~]]		[[Category: Lu JZ]]
	[[Category: Sakon, J]]		[[Category: Sakon J]]
	[[Category: Stites~~, W E]]~~		[[Category: Stites WE]]
	~~[[Category: Calcium]]~~
	~~[[Category: Dna hydrolase]]~~
	~~[[Category: Endonuclease]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Rna hydrolase]]~~
	~~[[Category: Signal~~]]

OCA at 09:52, 5 May 2021

2021-05-05T09:52:20Z

← Older revision		Revision as of 09:52, 5 May 2021
Line 3:		Line 3:
	<StructureSection load='2f0d' size='340' side='right'caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2f0d' size='340' side='right'caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2F0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [~~http~~://pdbe.org/2f0d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2f0d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2f0d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [https://pdbe.org/2f0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [https://www.ebi.ac.uk/pdbsum/2f0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f0d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.		[[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:

	==See Also==		==See Also==
	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]		*[[Staphylococcal nuclease 3D structures\|Staphylococcal nuclease 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:17, 24 July 2019

2019-07-24T07:17:27Z

← Older revision		Revision as of 07:17, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of Staphylococcal nuclease mutant I92V==		==Crystal structure of Staphylococcal nuclease mutant I92V==
	<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2f0d' size='340' side='right'caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f0/2f0d_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f0/2f0d_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f0d ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f0d ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

			==See Also==
			*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Lu, J Z]]		[[Category: Lu, J Z]]

OCA at 07:31, 18 October 2017

2017-10-18T07:31:33Z

← Older revision		Revision as of 07:31, 18 October 2017
Line 1:		Line 1:

	==Crystal structure of Staphylococcal nuclease mutant I92V==		==Crystal structure of Staphylococcal nuclease mutant I92V==
	<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://pdbe.org/2f0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://pdbe.org/2f0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2f0d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f0d ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

	~~==See Also==~~
	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:36, 11 September 2015

2015-09-11T11:36:28Z

← Older revision		Revision as of 11:36, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Staphylococcus_aureus Staphylococcus~~ aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 ~~Staphylococcus~~ aureus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://pdbe.org/2f0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	~~[[Category: Staphylococcus aureus]]~~
	[[Category: Lu, J Z]]		[[Category: Lu, J Z]]
	[[Category: Sakon, J]]		[[Category: Sakon, J]]

OCA at 15:56, 25 December 2014

2014-12-25T15:56:09Z

← Older revision		Revision as of 15:56, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
	[[Category: Lu, J Z.]]		[[Category: Lu, J Z]]
	[[Category: Sakon, J.]]		[[Category: Sakon, J]]
	[[Category: Stites, W E.]]		[[Category: Stites, W E]]
	[[Category: Calcium]]		[[Category: Calcium]]
	[[Category: Dna hydrolase]]		[[Category: Dna hydrolase]]

OCA at 03:08, 29 September 2014

2014-09-29T03:08:51Z

← Older revision		Revision as of 03:08, 29 September 2014
Line 1:		Line 1:
	~~[[Image:2f0d.png\|left\|200px]]~~		==Crystal structure of Staphylococcal nuclease mutant I92V==
			<StructureSection load='2f0d' size='340' side='right' caption='[[2f0d]], [[Resolution\|resolution]] 2.50Å' scene=''>
	~~{{STRUCTURE_2f0d\| PDB=2f0d \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F0D FirstGlance]. <br>
	===Crystal structure of Staphylococcal nuclease mutant I92V===		</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ey0\|1ey0]], [[2exz\|2exz]], [[2ey1\|2ey1]], [[2ey2\|2ey2]], [[2ey5\|2ey5]], [[2ey6\|2ey6]], [[2eyf\|2eyf]], [[2eyh\|2eyh]], [[2eyj\|2eyj]], [[2eyl\|2eyl]], [[2eym\|2eym]], [[2eyo\|2eyo]], [[2eyp\|2eyp]], [[2f0e\|2f0e]], [[2f0f\|2f0f]], [[2f0g\|2f0g]], [[2f0h\|2f0h]], [[2f0i\|2f0i]], [[2f0j\|2f0j]], [[2f0k\|2f0k]], [[2f0l\|2f0l]], [[2f0m\|2f0m]], [[2f0n\|2f0n]], [[2f0o\|2f0o]], [[2f0p\|2f0p]], [[2f0q\|2f0q]], [[2f0s\|2f0s]], [[2f0t\|2f0t]], [[2f0u\|2f0u]], [[2f0v\|2f0v]], [[2f0w\|2f0w]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f0d RCSB], [http://www.ebi.ac.uk/pdbsum/2f0d PDBsum]</span></td></tr>
	[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f0/2f0d_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]		*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
			__TOC__
			</StructureSection>
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]

OCA: Protected "2f0d" [edit=sysop:move=sysop]

2012-10-20T18:36:17Z

Protected "2f0d" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:36, 20 October 2012
(No difference)

OCA at 18:36, 20 October 2012

2012-10-20T18:36:16Z

← Older revision		Revision as of 18:36, 20 October 2012
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:2f0d.png\|left\|200px]]		[[Image:2f0d.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2f0d", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2f0d\| PDB=2f0d \| SCENE= }}		{{STRUCTURE_2f0d\| PDB=2f0d \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~2F0D~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA].		[[2f0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA].

			==See Also==
			*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
Line 23:		Line 19:
	[[Category: Dna hydrolase]]		[[Category: Dna hydrolase]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
			[[Category: Hydrolase]]
	[[Category: Rna hydrolase]]		[[Category: Rna hydrolase]]
	[[Category: Signal]]		[[Category: Signal]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:03:17 2009''~~

OCA at 19:03, 17 February 2009

2009-02-17T19:03:18Z

← Older revision		Revision as of 19:03, 17 February 2009
Line 1:		Line 1:
	[[Image:2f0d.~~jpg~~\|left\|200px]]		{{Seed}}
			[[Image:2f0d.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_2f0d\| PDB=2f0d \| SCENE= }}		{{STRUCTURE_2f0d\| PDB=2f0d \| SCENE= }}

	~~'''~~Crystal structure of Staphylococcal nuclease mutant I92V~~'''~~		===Crystal structure of Staphylococcal nuclease mutant I92V===


	==About this Structure==		==About this Structure==
	2F0D is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA].		2F0D is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F0D OCA].
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	~~[[Category: Single protein]]~~
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
	[[Category: Lu, J Z.]]		[[Category: Lu, J Z.]]
Line 25:		Line 25:
	[[Category: Rna hydrolase]]		[[Category: Rna hydrolase]]
	[[Category: Signal]]		[[Category: Signal]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4~~ 03:~~18:44 2008~~''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:03:17 2009''