2f87 - Revision history

OCA at 16:35, 13 December 2023

2023-12-13T16:35:52Z

← Older revision		Revision as of 16:35, 13 December 2023
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	==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==		==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==
	<StructureSection load='2f87' size='340' side='right'caption='[[2f87~~]], [[NMR_Ensembles_of_Models \| 13 NMR models~~]]' scene=''>		<StructureSection load='2f87' size='340' side='right'caption='[[2f87]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [https://pdbe.org/2f87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [https://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [https://pdbe.org/2f87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [https://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Kanai, A]]		[[Category: Kanai A]]
	[[Category: Kawai, G]]		[[Category: Kawai G]]
	[[Category: Nakamura, K]]		[[Category: Nakamura K]]
	[[Category: Okada, K]]		[[Category: Okada K]]
	[[Category: Sakamoto, T]]		[[Category: Sakamoto T]]
	[[Category: Takahashi, M]]		[[Category: Takahashi M]]
	~~[[Category: Gnrr]]~~
	~~[[Category: Rna]]~~
	~~[[Category: Srp~~]]

OCA at 16:01, 22 December 2021

2021-12-22T16:01:55Z

← Older revision		Revision as of 16:01, 22 December 2021
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	<StructureSection load='2f87' size='340' side='right'caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>		<StructureSection load='2f87' size='340' side='right'caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [~~http~~://pdbe.org/2f87 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [https://pdbe.org/2f87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [https://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:46, 18 March 2020

2020-03-18T10:46:44Z

← Older revision		Revision as of 10:46, 18 March 2020
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	==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==		==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==
	<StructureSection load='2f87' size='340' side='right' caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>		<StructureSection load='2f87' size='340' side='right'caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Kanai, A]]		[[Category: Kanai, A]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]

OCA at 08:49, 14 June 2018

2018-06-14T08:49:13Z

← Older revision		Revision as of 08:49, 14 June 2018
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	==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==		==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==
	<StructureSection load='2f87' size='340' side='right' caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>		<StructureSection load='2f87' size='340' side='right' caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://pdbe.org/2f87 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://pdbe.org/2f87 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2f87 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:52, 11 September 2015

2015-09-11T23:52:10Z

← Older revision		Revision as of 23:52, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://pdbe.org/2f87 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2f87" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:19, 22 December 2014

2014-12-22T05:19:04Z

← Older revision		Revision as of 05:19, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Kanai, A.]]		[[Category: Kanai, A]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]
	[[Category: Nakamura, K.]]		[[Category: Nakamura, K]]
	[[Category: Okada, K.]]		[[Category: Okada, K]]
	[[Category: Sakamoto, T.]]		[[Category: Sakamoto, T]]
	[[Category: Takahashi, M.]]		[[Category: Takahashi, M]]
	[[Category: Gnrr]]		[[Category: Gnrr]]
	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Srp]]		[[Category: Srp]]

OCA at 06:57, 9 June 2014

2014-06-09T06:57:16Z

← Older revision		Revision as of 06:57, 9 June 2014
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	[[~~Image~~:2f87.~~png\|left\|200px~~]]		==Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus==
			<StructureSection load='2f87' size='340' side='right' caption='[[2f87]], [[NMR_Ensembles_of_Models \| 13 NMR models]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F87 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f87 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f87 RCSB], [http://www.ebi.ac.uk/pdbsum/2f87 PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The NMR structure of a 12-mer RNA derived from the helix 6 of SRP RNA from Pyrococcus furiosus, whose loop-closing base pair is U.G, was determined, and the structural and thermodynamic properties of the RNA were compared with those of a mutant RNA with the C:G closing base pair. Although the structures of the two RNAs are similar to each other and adopt the GNRR motif the conformational stabilities are significantly different to each other It was suggested that weaker stacking interaction of the GAAG loop with the U:G closing base pair in 12-mer RNA causes the lower conformational stability.

	~~{{STRUCTURE_2f87\| PDB=2f87 \| SCENE= }}~~		Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus.,Okada K, Takahashi M, Sakamoto T, Kawai G, Nakamura K, Kanai A Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):383-95. PMID:16838833<ref>PMID:16838833</ref>

	~~===Solution structure~~ of ~~a GAAG tetraloop in SRP RNA from Pyrococcus furiosus===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_16838833}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2F87 OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:016838833<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Kanai, A.]]		[[Category: Kanai, A.]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]

OCA: Protected "2f87" [edit=sysop:move=sysop]

2012-08-14T15:27:32Z

Protected "2f87" [edit=sysop:move=sysop]

← Older revision	Revision as of 15:27, 14 August 2012
(No difference)

OCA at 15:27, 14 August 2012

2012-08-14T15:27:31Z

← Older revision		Revision as of 15:27, 14 August 2012
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	~~{{Seed}}~~
	[[Image:2f87.png\|left\|200px]]		[[Image:2f87.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2f87", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2f87\| PDB=2f87 \| SCENE= }}		{{STRUCTURE_2f87\| PDB=2f87 \| SCENE= }}

	===Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus===		===Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_16838833}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 16838833 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_16838833}}		{{ABSTRACT_PUBMED_16838833}}

	==About this Structure==		==About this Structure==
	Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA].		[[2f87]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA].

	==Reference==		==Reference==
	Solution structure of a GAAG tetraloop in helix 6 of SRP RNA from Pyrococcus furiosus., Okada K, Takahashi M, Sakamoto T, Kawai G, Nakamura K, Kanai A, Nucleosides Nucleotides Nucleic Acids. 2006;25(4-6):383-95. PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~16838833 16838833]~~		<ref group="xtra">PMID:016838833</ref><references group="xtra"/>
	[[Category: Kanai, A.]]		[[Category: Kanai, A.]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]
Line 33:		Line 21:
	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Srp]]		[[Category: Srp]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:57:46 2008''~~

OCA at 10:57, 29 July 2008

2008-07-29T10:57:48Z

← Older revision		Revision as of 10:57, 29 July 2008
Line 1:		Line 1:
	[[Image:2f87.~~gif~~\|left\|200px]]		{{Seed}}
			[[Image:2f87.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2f87\| PDB=2f87 \| SCENE= }}		{{STRUCTURE_2f87\| PDB=2f87 \| SCENE= }}

	~~'''~~Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus~~'''~~		===Solution structure of a GAAG tetraloop in SRP RNA from Pyrococcus furiosus===


	~~==Overview==~~		<!--
	The ~~NMR structure of a 12-mer RNA derived from the helix 6 of SRP RNA from Pyrococcus furiosus, whose loop-closing base pair is U.G~~, ~~was determined~~, ~~and~~ the ~~structural and thermodynamic properties of~~ the ~~RNA were compared with those of a mutant RNA with the C~~:~~G closing base pair~~. ~~Although~~ the structures of the two RNAs are similar to each other and adopt the GNRR motif the conformational stabilities are significantly different to each other It was suggested that weaker stacking interaction of the GAAG loop with the U:G closing base pair in 12-~~mer RNA causes the lower conformational stability.~~		The line below this paragraph, {{ABSTRACT_PUBMED_16838833}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 16838833 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_16838833}}

	==About this Structure==		==About this Structure==
	Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA].		Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F87 OCA].

	==Reference==		==Reference==
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	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Srp]]		[[Category: Srp]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 03~~:34:44 2008''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 13:57:46 2008''