2fte - Revision history

OCA at 08:27, 5 March 2025

2025-03-05T08:27:01Z

← Older revision		Revision as of 08:27, 5 March 2025
Line 1:		Line 1:

	==Bacteriophage HK97 Expansion Intermediate IV==		==Bacteriophage HK97 Expansion Intermediate IV==
	<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>		<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]], [[Resolution\|resolution]] 12.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 12Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
	</table>		</table>
Line 14:		Line 14:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2fte_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2fte_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Maturation of the bacteriophage HK97 capsid from a precursor (Prohead II) to the mature state (Head II) involves a 60 A radial expansion. The mature particle is formed by 420 copies of the major capsid protein organized on a T = 7 laevo lattice with each subunit covalently crosslinked to two neighbors. Well-characterized pH 4 expansion intermediates make HK97 valuable for investigating quaternary structural dynamics. Here, we use X-ray crystallography and cryo-EM to demonstrate that in the final transition in maturation (requiring neutral pH), pentons in Expansion Intermediate IV (EI-IV) reversibly sample 14 A translations and 6 degrees rotations relative to a fixed hexon lattice. The limit of this trajectory corresponds to the Head II conformation that is secured at this extent only by the formation of the final class of covalent crosslinks. Mutants that cannot crosslink or EI-IV particles that have been rendered incapable of forming the final crosslink remain in the EI-IV state.

			Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.,Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE Structure. 2006 Nov;14(11):1655-65. PMID:17098191<ref>PMID:17098191</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 2fte" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:25, 14 February 2024

2024-02-14T09:25:18Z

← Older revision		Revision as of 09:25, 14 February 2024
Line 3:		Line 3:
	<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>		<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bphk7 Bphk7~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</div></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy</td></tr>
	~~<tr~~ id~~='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class~~="~~sblockDat~~">~~5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	Maturation of the bacteriophage HK97 capsid from a precursor (Prohead II) to the mature state (Head II) involves a 60 A radial expansion. The mature particle is formed by 420 copies of the major capsid protein organized on a T = 7 laevo lattice with each subunit covalently crosslinked to two neighbors. Well-characterized pH 4 expansion intermediates make HK97 valuable for investigating quaternary structural dynamics. Here, we use X-ray crystallography and cryo-EM to demonstrate that in the final transition in maturation (requiring neutral pH), pentons in Expansion Intermediate IV (EI-IV) reversibly sample 14 A translations and 6 degrees rotations relative to a fixed hexon lattice. The limit of this trajectory corresponds to the Head II conformation that is secured at this extent only by the formation of the final class of covalent crosslinks. Mutants that cannot crosslink or EI-IV particles that have been rendered incapable of forming the final crosslink remain in the EI-IV state.

	Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.,Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE Structure. 2006 Nov;14(11):1655-65. PMID:17098191<ref>PMID:17098191</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 2fte" style="background-color:#fffaf0;"></div>~~
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</SX>		</SX>
	[[Category: ~~Bphk7~~]]		[[Category: Escherichia virus HK97]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Cheng, N]]		[[Category: Cheng N]]
	[[Category: Conway~~, J F~~]]		[[Category: Conway JF]]
	[[Category: Duda~~, R L~~]]		[[Category: Duda RL]]
	[[Category: Firek~~, B A~~]]		[[Category: Firek BA]]
	[[Category: Gan, L]]		[[Category: Gan L]]
	[[Category: Hendrix~~, R W~~]]		[[Category: Hendrix RW]]
	[[Category: Johnson~~, J E~~]]		[[Category: Johnson JE]]
	[[Category: Lander, G]]		[[Category: Lander G]]
	[[Category: Liljas, L]]		[[Category: Liljas L]]
	[[Category: Speir~~, J A]]~~		[[Category: Speir JA]]
	~~[[Category: Bacteriophage]]~~
	~~[[Category: Capsid protein]]~~
	~~[[Category: Expansion intermediate]]~~
	~~[[Category: Hk97]]~~
	~~[[Category: Virus-viral protein complex~~]]

OCA at 10:22, 12 January 2022

2022-01-12T10:22:21Z

← Older revision		Revision as of 10:22, 12 January 2022
Line 3:		Line 3:
	<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>		<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [~~http~~://pdbe.org/2fte PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fte PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 16:51, 10 April 2020

2020-04-10T16:51:49Z

← Older revision		Revision as of 16:51, 10 April 2020
Line 3:		Line 3:
	<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>		<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://pdbe.org/2fte PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://pdbe.org/2fte PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 04:23, 5 March 2020

2020-03-05T04:23:15Z

← Older revision		Revision as of 04:23, 5 March 2020
Line 1:		Line 1:

	==Bacteriophage HK97 Expansion Intermediate IV==		==Bacteriophage HK97 Expansion Intermediate IV==
	<~~StructureSection~~ load='2fte' size='340' side='right'caption='[[2fte]]' scene=''>		<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
Line 30:		Line 30:
	<references/>		<references/>
	__TOC__		__TOC__
	</~~StructureSection~~>		</SX>
	[[Category: Bphk7]]		[[Category: Bphk7]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:06, 6 November 2019

2019-11-06T07:06:28Z

← Older revision		Revision as of 07:06, 6 November 2019
Line 1:		Line 1:

	==Bacteriophage HK97 Expansion Intermediate IV==		==Bacteriophage HK97 Expansion Intermediate IV==
	<StructureSection load='2fte' size='340' side='right' caption='[[2fte]]' scene=''>		<StructureSection load='2fte' size='340' side='right'caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Bphk7]]		[[Category: Bphk7]]
			[[Category: Large Structures]]
	[[Category: Cheng, N]]		[[Category: Cheng, N]]
	[[Category: Conway, J F]]		[[Category: Conway, J F]]

OCA at 06:59, 20 June 2018

2018-06-20T06:59:32Z

← Older revision		Revision as of 06:59, 20 June 2018
Line 1:		Line 1:

	==Bacteriophage HK97 Expansion Intermediate IV==		==Bacteriophage HK97 Expansion Intermediate IV==
	<StructureSection load='2fte' size='340' side='right' caption='[[2fte]]' scene=''>		<StructureSection load='2fte' size='340' side='right' caption='[[2fte]]' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://pdbe.org/2fte PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://pdbe.org/2fte PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2fte_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2fte_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:55, 9 February 2016

2016-02-09T14:55:38Z

← Older revision		Revision as of 14:55, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:21, 10 September 2015

2015-09-10T23:21:01Z

← Older revision		Revision as of 23:21, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2fte' size='340' side='right' caption='[[2fte]]' scene=''>		<StructureSection load='2fte' size='340' side='right' caption='[[2fte]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_hk97 Enterobacteria phage hk97~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 ~~Enterobacteria phage HK97~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://pdbe.org/2fte PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2fte" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Enterobacteria phage hk97~~]]		[[Category: Bphk7]]
	[[Category: Cheng, N]]		[[Category: Cheng, N]]
	[[Category: Conway, J F]]		[[Category: Conway, J F]]

OCA at 09:03, 16 January 2015

2015-01-16T09:03:43Z

← Older revision		Revision as of 09:03, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fs3\|2fs3]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[1ohg\|1ohg]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 Enterobacteria phage HK97])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 Enterobacteria phage HK97])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [http://www.ebi.ac.uk/pdbsum/2fte PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage hk97]]		[[Category: Enterobacteria phage hk97]]
	[[Category: Cheng, N.]]		[[Category: Cheng, N]]
	[[Category: Conway, J F.]]		[[Category: Conway, J F]]
	[[Category: Duda, R L.]]		[[Category: Duda, R L]]
	[[Category: Firek, B A.]]		[[Category: Firek, B A]]
	[[Category: Gan, L.]]		[[Category: Gan, L]]
	[[Category: Hendrix, R W.]]		[[Category: Hendrix, R W]]
	[[Category: Johnson, J E.]]		[[Category: Johnson, J E]]
	[[Category: Lander, G.]]		[[Category: Lander, G]]
	[[Category: Liljas, L.]]		[[Category: Liljas, L]]
	[[Category: Speir, J A.]]		[[Category: Speir, J A]]
	[[Category: Bacteriophage]]		[[Category: Bacteriophage]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]