2got - Revision history

OCA at 13:51, 13 March 2024

2024-03-13T13:51:59Z

@@ Line 8: / Line 8: @@
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [https://pdbe.org/2got PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [https://www.ebi.ac.uk/pdbsum/2got PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>
 </table>
 __TOC__
 </StructureSection>

OCA at 15:45, 4 October 2023

2023-10-04T15:45:25Z

← Older revision		Revision as of 15:45, 4 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GOT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GOT FirstGlance]. <br>
	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=CBR:5-BROMO~~-2~~-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.602Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1ue3\|1ue3]], [[1ue4\|1ue4]]~~</~~div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [https://pdbe.org/2got PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [https://www.ebi.ac.uk/pdbsum/2got PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [https://pdbe.org/2got PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [https://www.ebi.ac.uk/pdbsum/2got PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Kondo, J]]		[[Category: Kondo J]]
	[[Category: Sunami, T]]		[[Category: Sunami T]]
	[[Category: Takenaka, A]]		[[Category: Takenaka A]]
	~~[[Category: Base-intercalated duplex]]~~
	~~[[Category: Bulge-containing duplex]]~~
	~~[[Category: Dna]]~~
	~~[[Category: Intra-duplex and inter-duplex hand-in-pocket motif]]~~
	~~[[Category: Single stranded dna~~]]

OCA at 14:46, 29 December 2021

2021-12-29T14:46:38Z

← Older revision		Revision as of 14:46, 29 December 2021
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	<StructureSection load='2got' size='340' side='right'caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='2got' size='340' side='right'caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GOT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GOT FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ue3\|1ue3]], [[1ue4\|1ue4]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [~~http~~://pdbe.org/2got PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2got PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [https://pdbe.org/2got PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [https://www.ebi.ac.uk/pdbsum/2got PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:17, 27 March 2020

2020-03-27T11:17:37Z

← Older revision		Revision as of 11:17, 27 March 2020
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	==Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes==		==Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes==
	<StructureSection load='2got' size='340' side='right' caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='2got' size='340' side='right'caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GOT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GOT FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Kondo, J]]		[[Category: Kondo, J]]
	[[Category: Sunami, T]]		[[Category: Sunami, T]]

OCA at 06:58, 20 June 2018

2018-06-20T06:58:44Z

← Older revision		Revision as of 06:58, 20 June 2018
Line 1:		Line 1:

	==Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes==		==Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes==
	<StructureSection load='2got' size='340' side='right' caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='2got' size='340' side='right' caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>
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	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://pdbe.org/2got PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://pdbe.org/2got PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2got ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:00, 10 September 2015

2015-09-10T11:00:31Z

← Older revision		Revision as of 11:00, 10 September 2015
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	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://pdbe.org/2got PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2got" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:10, 22 December 2014

2014-12-22T06:10:58Z

← Older revision		Revision as of 06:10, 22 December 2014
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GOT FirstGlance]. <br>		<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GOT FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Kondo, J.]]		[[Category: Kondo, J]]
	[[Category: Sunami, T.]]		[[Category: Sunami, T]]
	[[Category: Takenaka, A.]]		[[Category: Takenaka, A]]
	[[Category: Base-intercalated duplex]]		[[Category: Base-intercalated duplex]]
	[[Category: Bulge-containing duplex]]		[[Category: Bulge-containing duplex]]

OCA at 06:56, 9 June 2014

2014-06-09T06:56:14Z

← Older revision		Revision as of 06:56, 9 June 2014
Line 1:		Line 1:
	[[~~Image~~:~~2got~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes==
			<StructureSection load='2got' size='340' side='right' caption='[[2got]], [[Resolution\|resolution]] 2.60Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GOT FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ue3\|1ue3]], [[1ue4\|1ue4]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2got FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2got OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2got RCSB], [http://www.ebi.ac.uk/pdbsum/2got PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			In previous studies, it was reported that DNA fragments with the sequence d(gcGXYAgc) (where X = A or G and Y = A, T or G) form a stable base-intercalated duplex (Bi-duplex) in which the central X and Y residues are not involved in any base-pair interactions but are alternately stacked on each other between the two strands. To investigate the structural stability of the Bi-duplex, the crystal structure of d(gcGAACgc) with a point mutation at the sixth residue of the sequence, d(gcGAAAgc), has been determined. The two strands are associated in an antiparallel fashion to form two types of bulge-containing duplexes (Bc-duplexes), I and II, both of which are quite different from the Bi-duplex of the parent sequence. In both Bc-duplexes, three Watson-Crick G.C base pairs constitute the stem regions at the two ends. The A(4) residues are bulged in to form a pair with the corresponding A(4) residue of the opposite strand in either duplex. The A(4).A(4)* pair formation is correlated to the orientations of the adjacent A(5) residues. A remarkable difference between the two Bc-duplexes is seen at the A(5) residue. In Bc-duplex I, it is flipped out and comes back to interact with the G(3) residue. In Bc-duplex II, the A(5) residue extends outwards to interact with the G(7) residue of the neighbouring Bc-duplex I. These results indicate that trans sugar-edge/Hoogsteen (sheared-type) G(3).A(6)* base pairs are essential in the formation of a Bi-duplex of d(gcGXYAgc). On the other hand, the alternative conformations of the internal loops containing two consecutive bulged A residues suggest molecular switching.

	~~{{STRUCTURE_2got\| PDB=2got \| SCENE= }}~~		The structure of a d(gcGAACgc) duplex containing two consecutive bulged A residues in both strands suggests a molecular switch.,Kondo J, Sunami T, Takenaka A Acta Crystallogr D Biol Crystallogr. 2007 Jun;63(Pt 6):673-81. Epub 2007, May 15. PMID:17505105<ref>PMID:17505105</ref>

	~~===Crystal structure of d(GCGAACGC): two types~~ of ~~bulge-containing duplexes===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_17505105}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2GOT OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:017505105<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Kondo, J.]]		[[Category: Kondo, J.]]
	[[Category: Sunami, T.]]		[[Category: Sunami, T.]]

OCA: Protected "2got" [edit=sysop:move=sysop]

2012-08-14T18:01:02Z

Protected "2got" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:01, 14 August 2012
(No difference)

OCA at 18:01, 14 August 2012

2012-08-14T18:01:01Z

← Older revision		Revision as of 18:01, 14 August 2012
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	~~{{Seed}}~~
	[[Image:2got.png\|left\|200px]]		[[Image:2got.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2got", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2got\| PDB=2got \| SCENE= }}		{{STRUCTURE_2got\| PDB=2got \| SCENE= }}

	===Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes===		===Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_17505105}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 17505105 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_17505105}}		{{ABSTRACT_PUBMED_17505105}}

	==About this Structure==		==About this Structure==
	~~2GOT is a~~ [[~~Single protein~~]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA].		[[2got]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GOT OCA].

	==Reference==		==Reference==
	The structure of a d(gcGAACgc) duplex containing two consecutive bulged A residues in both strands suggests a molecular switch., Kondo J, Sunami T, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2007 Jun;63(Pt 6):673-81. Epub 2007, May 15. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17505105 17505105]~~		<ref group="xtra">PMID:017505105</ref><references group="xtra"/>
	~~[[Category: Single protein]]~~
	[[Category: Kondo, J.]]		[[Category: Kondo, J.]]
	[[Category: Sunami, T.]]		[[Category: Sunami, T.]]
Line 30:		Line 17:
	[[Category: Base-intercalated duplex]]		[[Category: Base-intercalated duplex]]
	[[Category: Bulge-containing duplex]]		[[Category: Bulge-containing duplex]]
	~~[[Category: Crystal structure]]~~
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Intra-duplex and inter-duplex hand-in-pocket motif]]		[[Category: Intra-duplex and inter-duplex hand-in-pocket motif]]
	[[Category: Single stranded dna]]		[[Category: Single stranded dna]]
	~~[[Category: X-ray structure]]~~

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 02:29:07 2008''~~