2it3 - Revision history

OCA at 08:14, 30 October 2024

2024-10-30T08:14:05Z

← Older revision		Revision as of 08:14, 30 October 2024
Line 15:		Line 15:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/2it3_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/2it3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 08:53, 25 October 2023

2023-10-25T08:53:57Z

← Older revision		Revision as of 08:53, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2it3' size='340' side='right'caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2it3' size='340' side='right'caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~'pyrococcus_shinkaii' 'pyrococcus shinkaii'~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2it2\|2it2]]~~</~~div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [https://pdbe.org/2it3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [https://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [https://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [https://pdbe.org/2it3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [https://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [https://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/TYW31_PYRHO TYW31_PYRHO]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.[HAMAP-Rule:MF_00266]		[https://www.uniprot.org/uniprot/TYW31_PYRHO TYW31_PYRHO] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.[HAMAP-Rule:MF_00266]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Pyrococcus shinkaii]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Lokanath, N K~~]]		[[Category: Pyrococcus horikoshii]]
	[[Category: ~~Structural genomic]]~~		[[Category: Lokanath NK]]
	~~[[Category: Hypothetical protein]]~~
	~~[[Category: National project on protein structural and functional analyse]]~~
	~~[[Category: Nppsfa]]~~
	~~[[Category: Rsgi]]~~
	~~[[Category: Unknown function~~]]

OCA at 10:31, 12 January 2022

2022-01-12T10:31:36Z

← Older revision		Revision as of 10:31, 12 January 2022
Line 3:		Line 3:
	<StructureSection load='2it3' size='340' side='right'caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2it3' size='340' side='right'caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2it2\|2it2]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [~~http~~://pdbe.org/2it3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [https://pdbe.org/2it3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [https://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [https://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/TYW31_PYRHO TYW31_PYRHO]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.[HAMAP-Rule:MF_00266]		[[https://www.uniprot.org/uniprot/TYW31_PYRHO TYW31_PYRHO]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.[HAMAP-Rule:MF_00266]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:50, 8 April 2020

2020-04-08T07:50:14Z

← Older revision		Revision as of 07:50, 8 April 2020
Line 1:		Line 1:

	==Structure of PH1069 protein from Pyrococcus horikoshii==		==Structure of PH1069 protein from Pyrococcus horikoshii==
	<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2it3' size='340' side='right'caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://pdbe.org/2it3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://pdbe.org/2it3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus shinkaii]]		[[Category: Pyrococcus shinkaii]]
			[[Category: Large Structures]]
	[[Category: Lokanath, N K]]		[[Category: Lokanath, N K]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:33, 4 July 2018

2018-07-04T08:33:13Z

← Older revision		Revision as of 08:33, 4 July 2018
Line 1:		Line 1:

	==Structure of PH1069 protein from Pyrococcus horikoshii==		==Structure of PH1069 protein from Pyrococcus horikoshii==
	<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://pdbe.org/2it3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://pdbe.org/2it3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2it3 ProSAT], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/2it3_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/2it3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:36, 7 February 2016

2016-02-07T05:36:10Z

← Older revision		Revision as of 05:36, 7 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2it3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 22:21, 9 September 2015

2015-09-09T22:21:39Z

← Older revision		Revision as of 22:21, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://pdbe.org/2it3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/~~Y1069_PYRHO Y1069_PYRHO~~]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72 ~~(By similarity)~~.		[[http://www.uniprot.org/uniprot/TYW31_PYRHO TYW31_PYRHO]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.[HAMAP-Rule:MF_00266]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus ~~horikoshii~~]]		[[Category: Pyrococcus shinkaii]]
	[[Category: Lokanath, N K]]		[[Category: Lokanath, N K]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:15, 24 December 2014

2014-12-24T08:15:28Z

← Older revision		Revision as of 08:15, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/Y1069_PYRHO Y1069_PYRHO]] S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Lokanath, N K.]]		[[Category: Lokanath, N K]]
	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]		[[Category: Structural genomic]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	~~[[Category: Riken structural genomics/proteomics initiative]]~~
	[[Category: Rsgi]]		[[Category: Rsgi]]
	~~[[Category: Structural genomic]]~~
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 09:01, 30 September 2014

2014-09-30T09:01:19Z

← Older revision		Revision as of 09:01, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2it3.png\|left\|200px]]~~		==Structure of PH1069 protein from Pyrococcus horikoshii==
			<StructureSection load='2it3' size='340' side='right' caption='[[2it3]], [[Resolution\|resolution]] 2.10Å' scene=''>
	~~{{STRUCTURE_2it3\| PDB=2it3 \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IT3 FirstGlance]. <br>
	===Structure of PH1069 protein from Pyrococcus horikoshii===		</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2it2\|2it2]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2it3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2it3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2it3 RCSB], [http://www.ebi.ac.uk/pdbsum/2it3 PDBsum], [http://www.topsan.org/Proteins/RSGI/2it3 TOPSAN]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[2it3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IT3 OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/2it3_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Lokanath, N K.]]		[[Category: Lokanath, N K.]]

OCA: Protected "2it3" [edit=sysop:move=sysop]

2013-01-07T11:20:31Z

Protected "2it3" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:20, 7 January 2013
(No difference)