2jsv - Revision history

OCA at 19:04, 29 May 2024

2024-05-29T19:04:57Z

← Older revision		Revision as of 19:04, 29 May 2024
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	==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==		==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==
	<StructureSection load='2jsv' size='340' side='right'caption='[[2jsv~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>		<StructureSection load='2jsv' size='340' side='right'caption='[[2jsv]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Strsg Strsg~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_sp._'group_G' Streptococcus sp. 'group G']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSV FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2gi9\|2gi9]]</div></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solid-state NMR</td></tr>
	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [https://pdbe.org/2jsv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [https://www.ebi.ac.uk/pdbsum/2jsv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [https://pdbe.org/2jsv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [https://www.ebi.ac.uk/pdbsum/2jsv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsv ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/SPG2_STRSG SPG2_STRSG]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Strsg~~]]		[[Category: Streptococcus sp. 'group G']]
	[[Category: Franks, W]]		[[Category: Franks W]]
	[[Category: Frericks~~, H L~~]]		[[Category: Frericks HL]]
	[[Category: Graesser~~, D T~~]]		[[Category: Graesser DT]]
	[[Category: Mayrhofer, R]]		[[Category: Mayrhofer R]]
	[[Category: Nieuwkoop~~, A J~~]]		[[Category: Nieuwkoop AJ]]
	[[Category: Rienstra~~, C M~~]]		[[Category: Rienstra CM]]
	[[Category: Shah~~, G J~~]]		[[Category: Shah GJ]]
	[[Category: Wylie~~, B J]]~~		[[Category: Wylie BJ]]
	~~[[Category: Cell wall]]~~
	~~[[Category: Gb1]]~~
	~~[[Category: Igg-binding protein]]~~
	~~[[Category: Immune system]]~~
	~~[[Category: Peptidoglycan-anchor]]~~
	~~[[Category: Ssnmr]]~~
	~~[[Category: Tensor refinement~~]]

OCA at 07:55, 7 April 2021

2021-04-07T07:55:31Z

← Older revision		Revision as of 07:55, 7 April 2021
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	==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==		==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==
	<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2jsv' size='340' side='right'caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Strsg Strsg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strsg Strsg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JSV FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2gi9\|2gi9]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [~~http~~://pdbe.org/2jsv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jsv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [https://pdbe.org/2jsv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [https://www.ebi.ac.uk/pdbsum/2jsv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsv ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Strsg]]		[[Category: Strsg]]
	[[Category: Franks, W]]		[[Category: Franks, W]]

OCA at 10:42, 18 July 2018

2018-07-18T10:42:13Z

← Older revision		Revision as of 10:42, 18 July 2018
Line 1:		Line 1:

	==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==		==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==
	<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
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	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://pdbe.org/2jsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://pdbe.org/2jsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jsv ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsv_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 15:00, 7 February 2016

2016-02-07T15:00:10Z

← Older revision		Revision as of 15:00, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jsv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:35, 10 September 2015

2015-09-10T02:35:54Z

← Older revision		Revision as of 02:35, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_sp._'group_g' Streptococcus sp. 'group g'~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strsg Strsg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSV FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 ~~Streptococcus sp. 'group G'~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 STRSG])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://pdbe.org/2jsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2jsv" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Streptococcus sp. 'group g'~~]]		[[Category: Strsg]]
	[[Category: Franks, W]]		[[Category: Franks, W]]
	[[Category: Frericks, H L]]		[[Category: Frericks, H L]]

OCA at 16:42, 19 January 2015

2015-01-19T16:42:33Z

← Older revision		Revision as of 16:42, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._'group_g' Streptococcus sp. 'group g']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._'group_g' Streptococcus sp. 'group g']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSV FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. 'group G'])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. 'group G'])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>

			==See Also==
			*[[Protein G\|Protein G]]
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Streptococcus sp. 'group g']]		[[Category: Streptococcus sp. 'group g']]
	[[Category: Franks, W.]]		[[Category: Franks, W]]
	[[Category: Frericks, H L.]]		[[Category: Frericks, H L]]
	[[Category: Graesser, D T.]]		[[Category: Graesser, D T]]
	[[Category: Mayrhofer, R.]]		[[Category: Mayrhofer, R]]
	[[Category: Nieuwkoop, A J.]]		[[Category: Nieuwkoop, A J]]
	[[Category: Rienstra, C M.]]		[[Category: Rienstra, C M]]
	[[Category: Shah, G J.]]		[[Category: Shah, G J]]
	[[Category: Wylie, B J.]]		[[Category: Wylie, B J]]
	[[Category: Cell wall]]		[[Category: Cell wall]]
	[[Category: Gb1]]		[[Category: Gb1]]

OCA at 09:30, 30 September 2014

2014-09-30T09:30:19Z

← Older revision		Revision as of 09:30, 30 September 2014
Line 1:		Line 1:
	[[Image:~~2jsv~~.~~png~~\|~~left~~\|~~200px~~]]		==Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy==
			<StructureSection load='2jsv' size='340' side='right' caption='[[2jsv]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._'group_g' Streptococcus sp. 'group g']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JSV FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gi9\|2gi9]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. 'group G'])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jsv RCSB], [http://www.ebi.ac.uk/pdbsum/2jsv PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/js/2jsv_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Magic-angle spinning (MAS) solid-state NMR (SSNMR) techniques have emerged in recent years for solving complete structures of uniformly labeled proteins lacking macroscopic order. Strategies used thus far have relied primarily on semiquantitative distance restraints, analogous to the nuclear Overhauser effect (NOE) routinely used in solution NMR. Here, we present a complementary approach for using relative orientations of molecular fragments, determined from dipolar line shapes. Whereas SSNMR distance restraints typically have an uncertainty of approximately 1 A, the tensor-based experiments report on relative vector (pseudobond) angles with precision of a few degrees. By using 3D techniques of this type, vector angle (VEAN) restraints were determined for the majority of the 56-residue B1 immunoglobulin binding domain of protein G [protein GB1 (a total of 47 HN-HN, 49 HN-HC, and 12 HA-HB restraints)]. By using distance restraints alone in the structure calculations, the overall backbone root-mean-square deviation (bbRMSD) was 1.01 +/- 0.13 A (1.52 +/- 0.12 A for all heavy atoms), which improved to 0.49 +/- 0.05 A (1.19 +/- 0.07 A) on the addition of empirical chemical shift [torsion angle likelihood obtained from shift and sequence similarity (TALOS)] restraints. VEAN restraints further improved the ensemble to 0.31 +/- 0.06 A bbRMSD (1.06 +/- 0.07 A); relative to the structure with distances alone, most of the improvement remained (bbRMSD 0.64 +/- 0.09 A; 1.29 +/- 0.07 A) when TALOS restraints were removed before refinement. These results represent significant progress toward atomic-resolution protein structure determination by SSNMR, capabilities that can be applied to a large range of membrane proteins and fibrils, which are often not amenable to solution NMR or x-ray crystallography.

	~~{{STRUCTURE_2jsv\| PDB=2jsv \| SCENE= }}~~		Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.,Franks WT, Wylie BJ, Schmidt HL, Nieuwkoop AJ, Mayrhofer RM, Shah GJ, Graesser DT, Rienstra CM Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4621-6. Epub 2008 Mar 14. PMID:18344321<ref>PMID:18344321</ref>

	~~===Dipole tensor-based refinement for atomic-resolution structure determination~~ of ~~a nanocrystalline protein by solid-state NMR spectroscopy===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18344321}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2jsv]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptococcus_sp~~.~~_'group_g' Streptococcus sp. 'group g']. Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:018344321<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Streptococcus sp. 'group g']]		[[Category: Streptococcus sp. 'group g']]
	[[Category: Franks, W.]]		[[Category: Franks, W.]]

OCA: Protected "2jsv" [edit=sysop:move=sysop]

2013-01-07T14:24:34Z

Protected "2jsv" [edit=sysop:move=sysop]

← Older revision	Revision as of 14:24, 7 January 2013
(No difference)

OCA at 14:24, 7 January 2013

2013-01-07T14:24:31Z

← Older revision		Revision as of 14:24, 7 January 2013
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	~~{{Seed}}~~
	[[Image:2jsv.png\|left\|200px]]		[[Image:2jsv.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2jsv", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2jsv\| PDB=2jsv \| SCENE= }}		{{STRUCTURE_2jsv\| PDB=2jsv \| SCENE= }}

	===Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy===		===Dipole tensor-based refinement for atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR spectroscopy===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_18344321}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 18344321 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_18344321}}		{{ABSTRACT_PUBMED_18344321}}

	==About this Structure==		==About this Structure==
	~~2JSV~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA].		[[2jsv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._'group_g' Streptococcus sp. 'group g']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~18344321~~</ref><references group="xtra"/>		<ref group="xtra">PMID:018344321</ref><references group="xtra"/>
	[[Category: ~~Bacteria~~]]		[[Category: Streptococcus sp. 'group g']]
	[[Category: Franks, W.]]		[[Category: Franks, W.]]
	[[Category: Frericks, H L.]]		[[Category: Frericks, H L.]]
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	[[Category: Ssnmr]]		[[Category: Ssnmr]]
	[[Category: Tensor refinement]]		[[Category: Tensor refinement]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:38:08 2009''~~

OCA at 12:38, 16 February 2009

2009-02-16T12:38:09Z

← Older revision		Revision as of 12:38, 16 February 2009
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	==About this Structure==		==About this Structure==
	2JSV is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA].		2JSV is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JSV OCA].

	==Reference==		==Reference==
	Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR., Franks WT, Wylie BJ, Schmidt HL, Nieuwkoop AJ, Mayrhofer RM, Shah GJ, Graesser DT, Rienstra CM, Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4621-6. Epub 2008 Mar 14. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18344321 18344321]~~		<ref group="xtra">PMID:18344321</ref><references group="xtra"/>
	[[Category: Bacteria]]		[[Category: Bacteria]]
	~~[[Category: Single protein]]~~
	[[Category: Franks, W.]]		[[Category: Franks, W.]]
	[[Category: Frericks, H L.]]		[[Category: Frericks, H L.]]
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	[[Category: Tensor refinement]]		[[Category: Tensor refinement]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Jul 27 17~~:19:~~25 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:38:08 2009''