2mtm - Revision history

OCA at 09:19, 6 November 2024

2024-11-06T09:19:53Z

← Older revision		Revision as of 09:19, 6 November 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ricinus_communis Ricinus communis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ricinus_communis Ricinus communis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [https://pdbe.org/2mtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [https://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 15 models</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [https://pdbe.org/2mtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [https://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:06, 8 March 2023

2023-03-08T08:06:30Z

← Older revision		Revision as of 08:06, 8 March 2023
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	==NMR structure of RCB-1 peptide==		==NMR structure of RCB-1 peptide==
	<StructureSection load='2mtm' size='340' side='right'caption='[[2mtm~~]], [[NMR_Ensembles_of_Models \| 15 NMR models~~]]' scene=''>		<StructureSection load='2mtm' size='340' side='right'caption='[[2mtm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ricinus_communis Ricinus communis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [https://pdbe.org/2mtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [https://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [https://pdbe.org/2mtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [https://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/B9T5G6_RICCO B9T5G6_RICCO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Boldbaatar, D~~]]		[[Category: Ricinus communis]]
	[[Category: ~~Elseedi, H R~~]]		[[Category: Boldbaatar D]]
	[[Category: ~~Biomarker]]~~		[[Category: Elseedi HR]]
	~~[[Category: Natural product]]~~
	~~[[Category: Unknown function~~]]

OCA at 15:20, 2 June 2021

2021-06-02T15:20:47Z

← Older revision		Revision as of 15:20, 2 June 2021
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	<StructureSection load='2mtm' size='340' side='right'caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='2mtm' size='340' side='right'caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [~~http~~://pdbe.org/2mtm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [https://pdbe.org/2mtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [https://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:47, 21 August 2019

2019-08-21T07:47:45Z

← Older revision		Revision as of 07:47, 21 August 2019
Line 1:		Line 1:

	==NMR structure of RCB-1 peptide==		==NMR structure of RCB-1 peptide==
	<StructureSection load='2mtm' size='340' side='right' caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='2mtm' size='340' side='right'caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Boldbaatar, D]]		[[Category: Boldbaatar, D]]
	[[Category: Elseedi, H R]]		[[Category: Elseedi, H R]]

OCA at 14:17, 16 November 2017

2017-11-16T14:17:36Z

← Older revision		Revision as of 14:17, 16 November 2017
Line 1:		Line 1:

	==NMR structure of RCB-1 peptide==		==NMR structure of RCB-1 peptide==
	<StructureSection load='2mtm' size='340' side='right' caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='2mtm' size='340' side='right' caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [http://pdbe.org/2mtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [http://www.ebi.ac.uk/pdbsum/2mtm PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [http://pdbe.org/2mtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [http://www.ebi.ac.uk/pdbsum/2mtm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mtm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:44, 30 November 2015

2015-11-30T21:44:49Z

← Older revision		Revision as of 21:44, 30 November 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [http://www.ebi.ac.uk/pdbsum/2mtm PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [http://pdbe.org/2mtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [http://www.ebi.ac.uk/pdbsum/2mtm PDBsum]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The Ricinus communis biomarker peptides RCB-1 to -3 comprise homologous sequences of 19 (RCB-1) or 18 (RCB-2 and -3) amino acid residues. They all include four cysteine moieties, which form two disulfide bonds. However, neither the 3D structure nor the biological activity of any of these peptides is known. The synthesis of RCB-1, using microwave-assisted, Fmoc-based solid-phase peptide synthesis, and a method for its oxidative folding are reported. The tertiary structure of RCB-1, subsequently established using solution-state NMR, reveals a twisted loop fold with antiparallel beta-sheets reinforced by the two disulfide bonds. Moreover, RCB-1 was tested for antibacterial, antifungal, and cytotoxic activity, as well as in a serum stability assay, in which it proved to be remarkably stable.

			Synthesis, Structural Characterization, and Bioactivity of the Stable Peptide RCB-1 from Ricinus communis.,Boldbaatar D, Gunasekera S, El-Seedi HR, Goransson U J Nat Prod. 2015 Nov 25;78(11):2545-51. doi: 10.1021/acs.jnatprod.5b00463. Epub, 2015 Oct 28. PMID:26509914<ref>PMID:26509914</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 2mtm" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:28, 2 September 2015

2015-09-02T12:28:30Z

← Older revision		Revision as of 12:28, 2 September 2015
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	'''~~Unreleased structure~~'''		==NMR structure of RCB-1 peptide==
			<StructureSection load='2mtm' size='340' side='right' caption='[[2mtm]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	~~The entry~~ 2mtm is ~~ON HOLD until Paper Publication~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2mtm]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MTM FirstGlance]. <br>
	~~Authors~~: ~~Boldbaatar, D~~.~~, Elseedi, H~~.R.		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mtm RCSB], [http://www.ebi.ac.uk/pdbsum/2mtm PDBsum]</span></td></tr>
			</table>
	~~Description~~: ~~NMR structure of RCB~~-~~1 peptide~~		__TOC__
	[[~~Category~~: ~~Unreleased Structures~~]]		</StructureSection>
	[[Category: Boldbaatar, D]]		[[Category: Boldbaatar, D]]
	[[Category: Elseedi, H.R]]		[[Category: Elseedi, H R]]
			[[Category: Biomarker]]
			[[Category: Natural product]]
			[[Category: Unknown function]]

OCA at 12:23, 24 December 2014

2014-12-24T12:23:19Z

← Older revision		Revision as of 12:23, 24 December 2014
Line 6:		Line 6:

	Description: NMR structure of RCB-1 peptide		Description: NMR structure of RCB-1 peptide
			[[Category: Unreleased Structures]]
			[[Category: Boldbaatar, D]]
			[[Category: Elseedi, H.R]]

OCA at 07:28, 24 September 2014

2014-09-24T07:28:09Z

← Older revision		Revision as of 07:28, 24 September 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 2mtm is ON HOLD		The entry 2mtm is ON HOLD until Paper Publication

	Authors: Boldbaatar, D., Elseedi, H.R.		Authors: Boldbaatar, D., Elseedi, H.R.

	Description: NMR structure of RCB-1 peptide		Description: NMR structure of RCB-1 peptide

OCA at 03:29, 4 September 2014

2014-09-04T03:29:08Z

← Older revision		Revision as of 03:29, 4 September 2014
Line 5:		Line 5:
	Authors: Boldbaatar, D., Elseedi, H.R.		Authors: Boldbaatar, D., Elseedi, H.R.

	Description: ~~Backbone 1H, 13C, and 15N Chemical Shift Assignments for~~ RCB-1 peptide		Description: NMR structure of RCB-1 peptide