2nbi - Revision history

OCA at 05:22, 17 October 2024

2024-10-17T05:22:26Z

← Older revision		Revision as of 05:22, 17 October 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cylindrotheca_fusiformis Cylindrotheca fusiformis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cylindrotheca_fusiformis Cylindrotheca fusiformis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBI FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [https://pdbe.org/2nbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [https://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [https://pdbe.org/2nbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [https://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:26, 15 March 2023

2023-03-15T10:26:28Z

← Older revision		Revision as of 10:26, 15 March 2023
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	==Structure of the PSCD-region of the cell wall protein pleuralin-1==		==Structure of the PSCD-region of the cell wall protein pleuralin-1==
	<StructureSection load='2nbi' size='340' side='right'caption='[[2nbi~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>		<StructureSection load='2nbi' size='340' side='right'caption='[[2nbi]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cylfu Cylfu~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cylindrotheca_fusiformis Cylindrotheca fusiformis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBI FirstGlance]. <br>
	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2mk0\|2mk0]]</div></td></tr>~~		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [https://pdbe.org/2nbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [https://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hepA, Pleuralin-1 protein ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2853 CYLFU])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [https://pdbe.org/2nbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [https://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/O22015_CYLFU O22015_CYLFU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Cylfu~~]]		[[Category: Cylindrotheca fusiformis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Brunner, E]]		[[Category: Brunner E]]
	[[Category: Kalbitzer~~, H R~~]]		[[Category: De Sanctis S]]
	[[Category: Kremer, W]]		[[Category: Kalbitzer HR]]
	[[Category: Kroeger, N]]		[[Category: Kremer W]]
	[[Category: Malloni~~, W M~~]]		[[Category: Kroeger N]]
	[[Category: Rainer, D]]		[[Category: Malloni WM]]
	~~[[Category: Sanctis, S De~~]]		[[Category: Rainer D]]
	[[Category: Sumper, M]]		[[Category: Sumper M]]
	[[Category: Wenzler, M]]		[[Category: Wenzler M]]
	[[Category: Zadravec, P]]		[[Category: Zadravec P]]
	~~[[Category: Cylindrotheka fusiformi]]~~
	~~[[Category: Diatom cell wall protein]]~~
	~~[[Category: Pleuralin-1]]~~
	~~[[Category: Pscd1]]~~
	~~[[Category: Pscd2]]~~
	~~[[Category: Pscd3]]~~
	~~[[Category: Pscd4]]~~
	~~[[Category: Pscd4-domain]]~~
	~~[[Category: Pscd5]]~~
	~~[[Category: Structural protein~~]]

OCA at 15:43, 8 June 2021

2021-06-08T15:43:46Z

← Older revision		Revision as of 15:43, 8 June 2021
Line 1:		Line 1:

	==Structure of the PSCD-region of the cell wall protein pleuralin-1==		==Structure of the PSCD-region of the cell wall protein pleuralin-1==
	<StructureSection load='2nbi' size='340' side='right' caption='[[2nbi]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2nbi' size='340' side='right'caption='[[2nbi]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Cylfu Cylfu]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2NBI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cylfu Cylfu]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBI FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mk0\|2mk0]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2mk0\|2mk0]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hepA, Pleuralin-1 protein ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2853 CYLFU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hepA, Pleuralin-1 protein ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2853 CYLFU])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [~~http~~://pdbe.org/2nbi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [https://pdbe.org/2nbi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [https://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Cylfu]]		[[Category: Cylfu]]
			[[Category: Large Structures]]
	[[Category: Brunner, E]]		[[Category: Brunner, E]]
	[[Category: Kalbitzer, H R]]		[[Category: Kalbitzer, H R]]

OCA at 09:44, 26 September 2018

2018-09-26T09:44:04Z

← Older revision		Revision as of 09:44, 26 September 2018
Line 3:		Line 3:
	<StructureSection load='2nbi' size='340' side='right' caption='[[2nbi]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2nbi' size='340' side='right' caption='[[2nbi]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cylfu Cylfu]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBI FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mk0\|2mk0]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mk0\|2mk0]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hepA, Pleuralin-1 protein ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2853 CYLFU])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [http://pdbe.org/2nbi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [http://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [http://pdbe.org/2nbi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [http://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Cylfu]]
	[[Category: Brunner, E]]		[[Category: Brunner, E]]
	[[Category: Kalbitzer, H R]]		[[Category: Kalbitzer, H R]]

OCA at 21:32, 22 December 2016

2016-12-22T21:32:51Z

← Older revision		Revision as of 21:32, 22 December 2016
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	The ~~entry 2nbi~~ is ~~ON HOLD~~		==Structure of the PSCD-region of the cell wall protein pleuralin-1==
			<StructureSection load='2nbi' size='340' side='right' caption='[[2nbi]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2nbi]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBI FirstGlance]. <br>
			</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mk0\|2mk0]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbi OCA], [http://pdbe.org/2nbi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbi RCSB], [http://www.ebi.ac.uk/pdbsum/2nbi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbi ProSAT]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Diatoms are eukaryotic unicellular algae characterized by silica cell walls and associated with three unique protein families, the pleuralins, frustulins, and silaffins. The NMR structure of the PSCD4 domain of pleuralin-1 from Cylindrotheca fusiformis contains only three short helical elements and is stabilized by five unique disulfide bridges. PSCD4 contains two binding sites for Ca(2+) ions with millimolar affinity. NMR-based interaction studies show an interaction of the domain with native silaffin-1A as well as with alpha-frustulins. The interaction sites of the two proteins mapped on the PSCD4 structure are contiguous and show only a small overlap. A plausible functional role of pleuralin could be to bind simultaneously silaffin-1A located inside the cell wall and alpha-frustulin coating the cell wall, thus connecting the interfaces between hypotheca and epitheca at the girdle bands. Restrained molecular dynamics calculations suggest a bead-chain-like structure of the central part of pleuralin-1.

	~~Authors~~: De Sanctis, S., Wenzler, M~~., Kroeger~~, N., Malloni~~, W.M.~~, Sumper, M., ~~Rainer, D.~~, Zadravec, P., Brunner, E., Kremer, W., Kalbitzer, ~~H.R~~.		PSCD Domains of Pleuralin-1 from the Diatom Cylindrotheca fusiformis: NMR Structures and Interactions with Other Biosilica-Associated Proteins.,De Sanctis S, Wenzler M, Kroger N, Malloni WM, Sumper M, Deutzmann R, Zadravec P, Brunner E, Kremer W, Kalbitzer HR Structure. 2016 Jul 6;24(7):1178-91. doi: 10.1016/j.str.2016.04.021. Epub 2016, Jun 16. PMID:27320836<ref>PMID:27320836</ref>

	~~Description: Structure~~ of the ~~PSCD4~~-~~domain of the cell wall protein pleuralin~~-~~1 from diatom Cylindrotheca fusiformis~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	[[Category: ~~Unreleased Structures~~]]		</div>
	[[Category: ~~De Sanctis~~, S]]		<div class="pdbe-citations 2nbi" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
			[[Category: Brunner, E]]
			[[Category: Kalbitzer, H R]]
			[[Category: Kremer, W]]
	[[Category: Kroeger, N]]		[[Category: Kroeger, N]]
			[[Category: Malloni, W M]]
	[[Category: Rainer, D]]		[[Category: Rainer, D]]
	[[Category: ~~Malloni~~, ~~W.M~~]]		[[Category: Sanctis, S De]]
	[[Category: ~~Kalbitzer~~, ~~H.R]]~~		[[Category: Sumper, M]]
	~~[[Category: Brunner, E~~]]
	[[Category: Wenzler, M]]		[[Category: Wenzler, M]]
	[[Category: Zadravec, P]]		[[Category: Zadravec, P]]
	[[Category: ~~Sumper, M~~]]		[[Category: Cylindrotheka fusiformi]]
	[[Category: ~~Kremer, W~~]]		[[Category: Diatom cell wall protein]]
			[[Category: Pleuralin-1]]
			[[Category: Pscd1]]
			[[Category: Pscd2]]
			[[Category: Pscd3]]
			[[Category: Pscd4]]
			[[Category: Pscd4-domain]]
			[[Category: Pscd5]]
			[[Category: Structural protein]]

OCA: Protected "2nbi" [edit=sysop:move=sysop]

2016-03-02T07:26:50Z

Protected "2nbi" [edit=sysop:move=sysop]

← Older revision	Revision as of 07:26, 2 March 2016
(No difference)

OCA: New page: '''Unreleased structure''' The entry 2nbi is ON HOLD Authors: De Sanctis, S., Wenzler, M., Kroeger, N., Malloni, W.M., Sumper, M., Rainer, D., Zadravec, P., Brunner, E., Kremer, W., Kal...

2016-03-02T07:26:48Z

New page: '''Unreleased structure''' The entry 2nbi is ON HOLD Authors: De Sanctis, S., Wenzler, M., Kroeger, N., Malloni, W.M., Sumper, M., Rainer, D., Zadravec, P., Brunner, E., Kremer, W., Kal...

New page

'''Unreleased structure'''

The entry 2nbi is ON HOLD

Authors: De Sanctis, S., Wenzler, M., Kroeger, N., Malloni, W.M., Sumper, M., Rainer, D., Zadravec, P., Brunner, E., Kremer, W., Kalbitzer, H.R.

Description: Structure of the PSCD4-domain of the cell wall protein pleuralin-1 from diatom Cylindrotheca fusiformis
[[Category: Unreleased Structures]]
[[Category: De Sanctis, S]]
[[Category: Kroeger, N]]
[[Category: Rainer, D]]
[[Category: Malloni, W.M]]
[[Category: Kalbitzer, H.R]]
[[Category: Brunner, E]]
[[Category: Wenzler, M]]
[[Category: Zadravec, P]]
[[Category: Sumper, M]]
[[Category: Kremer, W]]