2o7i - Revision history

OCA at 10:32, 30 August 2023

2023-08-30T10:32:59Z

← Older revision		Revision as of 10:32, 30 August 2023
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	<StructureSection load='2o7i' size='340' side='right'caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2o7i' size='340' side='right'caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43589 Atcc 43589~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7I FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2o7j\|2o7j]]~~</~~div~~><~~/td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene></td></tr>
	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></~~td><td class="sblockDat"~~>~~tm0031 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [https://pdbe.org/2o7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [https://www.ebi.ac.uk/pdbsum/2o7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [https://pdbe.org/2o7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [https://www.ebi.ac.uk/pdbsum/2o7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7i ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q9WXN8_THEMA Q9WXN8_THEMA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Atcc 43589]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Cuneo, M J~~]]		[[Category: Thermotoga maritima]]
	[[Category: ~~Hellinga, H W~~]]		[[Category: Cuneo MJ]]
	[[Category: ~~Cellobiose binding protein]]~~		[[Category: Hellinga HW]]
	~~[[Category: Cellulose]]~~
	~~[[Category: Periplasmic binding protein]]~~
	~~[[Category: Sugar binding protein]]~~
	~~[[Category: Thermophilic protein~~]]

OCA at 16:02, 8 June 2021

2021-06-08T16:02:13Z

← Older revision		Revision as of 16:02, 8 June 2021
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	==The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose==		==The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose==
	<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2o7i' size='340' side='right'caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2O7I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~CBI~~:~~CELLOBIOSE~~'>~~CBI~~</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2o7j\|2o7j]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [~~http~~://pdbe.org/2o7i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2o7i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [https://pdbe.org/2o7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [https://www.ebi.ac.uk/pdbsum/2o7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7i ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7i_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</div>		</div>
	<div class="pdbe-citations 2o7i" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2o7i" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[ABC transporter 3D structures\|ABC transporter 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 43589]]		[[Category: Atcc 43589]]
			[[Category: Large Structures]]
	[[Category: Cuneo, M J]]		[[Category: Cuneo, M J]]
	[[Category: Hellinga, H W]]		[[Category: Hellinga, H W]]

OCA at 08:53, 18 October 2017

2017-10-18T08:53:18Z

← Older revision		Revision as of 08:53, 18 October 2017
Line 1:		Line 1:

	==The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose==		==The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose==
	<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://pdbe.org/2o7i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://pdbe.org/2o7i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7i ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</div>		</div>
	<div class="pdbe-citations 2o7i" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2o7i" style="background-color:#fffaf0;"></div>

	~~==See Also==~~
	*[[ABC transporter\|ABC transporter]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:28, 7 February 2016

2016-02-07T12:28:04Z

← Older revision		Revision as of 12:28, 7 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o7i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:30, 10 September 2015

2015-09-10T01:30:35Z

← Older revision		Revision as of 01:30, 10 September 2015
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	<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermotoga_maritima Thermotoga maritima~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ~~Thermotoga maritima~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://pdbe.org/2o7i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2o7i" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Thermotoga maritima~~]]		[[Category: Atcc 43589]]
	[[Category: Cuneo, M J]]		[[Category: Cuneo, M J]]
	[[Category: Hellinga, H W]]		[[Category: Hellinga, H W]]

OCA at 15:02, 19 January 2015

2015-01-19T15:02:17Z

← Older revision		Revision as of 15:02, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7I FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuneo, M J.]]		[[Category: Cuneo, M J]]
	[[Category: Hellinga, H W.]]		[[Category: Hellinga, H W]]
	[[Category: Cellobiose binding protein]]		[[Category: Cellobiose binding protein]]
	[[Category: Cellulose]]		[[Category: Cellulose]]

OCA at 05:02, 29 September 2014

2014-09-29T05:02:22Z

← Older revision		Revision as of 05:02, 29 September 2014
Line 1:		Line 1:
	[[Image:~~2o7i~~.~~png~~\|~~left~~\|~~200px~~]]		==The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose==
			<StructureSection load='2o7i' size='340' side='right' caption='[[2o7i]], [[Resolution\|resolution]] 1.50Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7I FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2o7j\|2o7j]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tm0031 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7i RCSB], [http://www.ebi.ac.uk/pdbsum/2o7i PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7i_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Periplasmic binding proteins (PBPs) constitute a protein superfamily that binds a wide variety of ligands. In prokaryotes, PBPs function as receptors for ATP-binding cassette or tripartite ATP-independent transporters and chemotaxis systems. In many instances, PBPs bind their cognate ligands with exquisite specificity, distinguishing, for example, between sugar epimers or structurally similar anions. By contrast, oligopeptide-binding proteins bind their ligands through interactions with the peptide backbone but do not distinguish between different side chains. The extremophile Thermotoga maritima possesses a remarkable array of carbohydrate-processing metabolic systems, including the hydrolysis of cellulosic polymers. Here, we present the crystal structure of a T. maritima cellobiose-binding protein (tm0031) that is homologous to oligopeptide-binding proteins. T. maritima cellobiose-binding protein binds a variety of lengths of beta(1-->4)-linked glucose oligomers, ranging from two rings (cellobiose) to five (cellopentaose). The structure reveals that binding is semi-specific. The disaccharide at the nonreducing end binds specifically; the other rings are located in a large solvent-filled groove, where the reducing end makes several contacts with the protein, thereby imposing an upper limit of the oligosaccharides that are recognized. Semi-specific recognition, in which a molecular class rather than individual species is selected, provides an efficient solution for the uptake of complex mixtures.

	~~{{STRUCTURE_2o7i\| PDB=2o7i \| SCENE= }}~~		Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold.,Cuneo MJ, Beese LS, Hellinga HW J Biol Chem. 2009 Nov 27;284(48):33217-23. Epub 2009 Oct 2. PMID:19801540<ref>PMID:19801540</ref>

	~~===The X-ray crystal structure~~ of ~~a thermophilic cellobiose binding protein bound with cellobiose===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_19801540}}~~

	~~==About this Structure==~~
	~~[[2o7i]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermotoga_maritima Thermotoga maritima]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA].~~

	==See Also==		==See Also==
	*[[ABC transporter\|ABC transporter]]		*[[ABC transporter\|ABC transporter]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:019801540<~~/~~ref~~><~~references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuneo, M J.]]		[[Category: Cuneo, M J.]]

OCA at 06:38, 20 October 2012

2012-10-20T06:38:50Z

← Older revision		Revision as of 06:38, 20 October 2012
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	==About this Structure==		==About this Structure==
	[[2o7i]] is a 1 chain structure ~~of [[ABC transporter]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA].		[[2o7i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7I OCA].

	==See Also==		==See Also==

OCA at 13:52, 25 July 2012

2012-07-25T13:52:23Z

← Older revision		Revision as of 13:52, 25 July 2012
Line 1:		Line 1:
	[[Image:2o7i.png\|left\|200px]]		[[Image:2o7i.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2o7i", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2o7i\| PDB=2o7i \| SCENE= }}		{{STRUCTURE_2o7i\| PDB=2o7i \| SCENE= }}

	===The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose===		===The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_19801540}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 19801540 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_19801540}}		{{ABSTRACT_PUBMED_19801540}}

Line 22:		Line 11:

	==See Also==		==See Also==
	*[[ABC transporter]]		*[[ABC transporter\|ABC transporter]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~19801540~~</ref><references group="xtra"/>		<ref group="xtra">PMID:019801540</ref><references group="xtra"/>
	[[Category: Thermotoga maritima]]		[[Category: Thermotoga maritima]]
	[[Category: Cuneo, M J.]]		[[Category: Cuneo, M J.]]

OCA: Protected "2o7i" [edit=sysop:move=sysop]

2010-12-27T01:07:36Z

Protected "2o7i" [edit=sysop:move=sysop]

← Older revision	Revision as of 01:07, 27 December 2010
(No difference)