2o7t - Revision history

OCA at 08:23, 30 October 2024

2024-10-30T08:23:02Z

← Older revision		Revision as of 08:23, 30 October 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7T FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~"><~~scene name~~='~~pdbligand~~=~~MSE~~:~~SELENOMETHIONINE'~~>~~MSE~~</~~scene~~>, <scene name='pdbligand=~~UNL~~:~~UNKNOWN+LIGAND~~'>~~UNL~~</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [https://pdbe.org/2o7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [https://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [https://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [https://pdbe.org/2o7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [https://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [https://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	</table>		</table>
Line 14:		Line 15:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7t_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7t_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 06:47, 25 January 2023

2023-01-25T06:47:23Z

← Older revision		Revision as of 06:47, 25 January 2023
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	<StructureSection load='2o7t' size='340' side='right'caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2o7t' size='340' side='right'caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7T FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=~~UNL~~:~~UNKNOWN+LIGAND~~'>~~UNL~~</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [https://pdbe.org/2o7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [https://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [https://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [https://pdbe.org/2o7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [https://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [https://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q8NQ14_CORGL Q8NQ14_CORGL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Micrococcus glutamicus kinoshita et al. 1958~~]]		[[Category: Corynebacterium glutamicum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Structural genomic]]~~
	~~[[Category: Dna/rna-binding 3-helical bundle fold]]~~
	~~[[Category: Helix turn helix motif]]~~
	~~[[Category: Hth motif]]~~
	~~[[Category: Jcsg]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Transcription]]~~
	~~[[Category: Transcription regulation]]~~
	~~[[Category: Transcription regulator]]~~

OCA at 16:02, 8 June 2021

2021-06-08T16:02:25Z

← Older revision		Revision as of 16:02, 8 June 2021
Line 1:		Line 1:

	==Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution==		==Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution==
	<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2o7t' size='340' side='right'caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2O7T FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [~~http~~://pdbe.org/2o7t PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [https://pdbe.org/2o7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [https://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [https://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7t_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7t_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o7t ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o7t ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

			==See Also==
			*[[Tetracycline repressor protein 3D structures\|Tetracycline repressor protein 3D structures]]
			*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Micrococcus glutamicus kinoshita et al. 1958]]		[[Category: Micrococcus glutamicus kinoshita et al. 1958]]
			[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Dna/rna-binding 3-helical bundle fold]]		[[Category: Dna/rna-binding 3-helical bundle fold]]

OCA at 08:53, 18 October 2017

2017-10-18T08:53:35Z

← Older revision		Revision as of 08:53, 18 October 2017
Line 1:		Line 1:

	==Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution==		==Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution==
	<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://pdbe.org/2o7t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://pdbe.org/2o7t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2o7t ProSAT], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o7t ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 15:09, 11 September 2015

2015-09-11T15:09:37Z

← Older revision		Revision as of 15:09, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Corynebacterium_glutamicum Corynebacterium glutamicum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7T FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_glutamicus"_kinoshita_et_al._1958 "micrococcus glutamicus" kinoshita et al. 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 ~~Corynebacterium glutamicum~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 "Micrococcus glutamicus" Kinoshita et al. 1958])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://pdbe.org/2o7t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Corynebacterium glutamicum~~]]		[[Category: Micrococcus glutamicus kinoshita et al. 1958]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Dna/rna-binding 3-helical bundle fold]]		[[Category: Dna/rna-binding 3-helical bundle fold]]

OCA at 16:31, 19 January 2015

2015-01-19T16:31:30Z

← Older revision		Revision as of 16:31, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7T FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 Corynebacterium glutamicum])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 Corynebacterium glutamicum])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Corynebacterium glutamicum]]		[[Category: Corynebacterium glutamicum]]
	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Dna/rna-binding 3-helical bundle fold]]		[[Category: Dna/rna-binding 3-helical bundle fold]]
	[[Category: Helix turn helix motif]]		[[Category: Helix turn helix motif]]
	[[Category: Hth motif]]		[[Category: Hth motif]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: ~~Joint center for structural genomic]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category:~~ Protein structure initiative]]
	~~[[Category: Psi-2]]~~
	~~[[Category: Structural genomic~~]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

OCA at 19:18, 30 September 2014

2014-09-30T19:18:32Z

← Older revision		Revision as of 19:18, 30 September 2014
Line 1:		Line 1:
	~~[[Image:2o7t.png\|left\|200px]]~~		==Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution==
			<StructureSection load='2o7t' size='340' side='right' caption='[[2o7t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	~~{{STRUCTURE_2o7t\| PDB=2o7t \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O7T FirstGlance]. <br>
	===Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene><br>
			<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_600854.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1718 Corynebacterium glutamicum])</td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o7t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o7t RCSB], [http://www.ebi.ac.uk/pdbsum/2o7t PDBsum], [http://www.topsan.org/Proteins/JCSG/2o7t TOPSAN]</span></td></tr>
	[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/2o7t_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Corynebacterium glutamicum]]		[[Category: Corynebacterium glutamicum]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 13:11, 30 January 2013

2013-01-30T13:11:57Z

@@ Line 1: / Line 1: @@
 [[Image:2o7t.png|left|200px]]
 {{STRUCTURE_2o7t|  PDB=2o7t  |  SCENE=  }}
@@ Line 16: / Line 10: @@
 [[Category: Corynebacterium glutamicum]]
 [[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "2o7t" [edit=sysop:move=sysop]

2011-03-23T06:12:09Z

Protected "2o7t" [edit=sysop:move=sysop]

← Older revision	Revision as of 06:12, 23 March 2011
(No difference)

OCA at 06:12, 23 March 2011

2011-03-23T06:12:07Z

← Older revision		Revision as of 06:12, 23 March 2011
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:2o7t.png\|left\|200px]]		[[Image:2o7t.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_2o7t\| PDB=2o7t \| SCENE= }}		{{STRUCTURE_2o7t\| PDB=2o7t \| SCENE= }}

	===Crystal structure of transcriptional regulator (~~NP_600854.1~~) from ~~Corynebacterium~~ glutamicum ~~ATCC 13032 Kitasato~~ at 2.10 A resolution===		===Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution===


	==About this Structure==		==About this Structure==
	~~2O7T~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA].		[[2o7t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O7T OCA].
	[[Category: Corynebacterium glutamicum]]		[[Category: Corynebacterium glutamicum]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	~~[[Category: Jcsg]]~~
	~~[[Category: Joint center for structural genomic]]~~
	~~[[Category: Np_600854 1]]~~
	~~[[Category: Protein structure initiative]]~~
	~~[[Category: Psi-2]]~~
	~~[[Category: Structural genomic]]~~
	~~[[Category: Transcriptional regulator]]~~

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:04:09 2008''~~