2phf - Revision history

OCA at 11:02, 30 August 2023

2023-08-30T11:02:01Z

← Older revision		Revision as of 11:02, 30 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA~~</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN~~</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><~~/td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	~~<tr id~~='~~NonStdRes'><td class~~=~~"sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res~~:~~]]</b~~></~~td><td class="sblockDat"~~><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene><~~/td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PRD_900112:3alpha-alpha-mannobiose'>PRD_900112</scene></td></tr>
	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;~~'>~~[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]~~</~~div~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [https://pdbe.org/2phf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [https://www.ebi.ac.uk/pdbsum/2phf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2phf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [https://pdbe.org/2phf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [https://www.ebi.ac.uk/pdbsum/2phf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2phf ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q8GSD2_PTEAG Q8GSD2_PTEAG]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L]]		[[Category: Buts L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino A]]
	[[Category: Imberty, A]]		[[Category: Imberty A]]
	[[Category: Loris, R]]		[[Category: Loris R]]
	[[Category: Wyns, L]]		[[Category: Wyns L]]
	~~[[Category: Carbohydrate]]~~
	~~[[Category: High mannose]]~~
	~~[[Category: Lectin]]~~
	~~[[Category: Sugar binding protein~~]]

OCA at 20:51, 20 October 2021

2021-10-20T20:51:53Z

← Older revision		Revision as of 20:51, 20 October 2021
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	<StructureSection load='2phf' size='340' side='right'caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2phf' size='340' side='right'caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA-D-MANNOSE~~'>~~MAN~~</scene>, <scene name='pdbligand=MN:~~MANGANESE+(II)+ION~~'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [~~http~~://pdbe.org/2phf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2phf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2phf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [https://pdbe.org/2phf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [https://www.ebi.ac.uk/pdbsum/2phf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2phf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:43, 25 December 2019

2019-12-25T09:43:28Z

← Older revision		Revision as of 09:43, 25 December 2019
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	<StructureSection load='2phf' size='340' side='right'caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2phf' size='340' side='right'caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bleedwood_tree Bleedwood tree~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Bleedwood tree]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
			[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 07:26, 31 July 2019

2019-07-31T07:26:46Z

← Older revision		Revision as of 07:26, 31 July 2019
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	==Pterocarpus angolensis lectin complexed with Man-6==		==Pterocarpus angolensis lectin complexed with Man-6==
	<StructureSection load='2phf' size='340' side='right' caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2phf' size='340' side='right'caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/2phf_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/2phf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</StructureSection>		</StructureSection>
	[[Category: Bleedwood tree]]		[[Category: Bleedwood tree]]
			[[Category: Large Structures]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 09:25, 18 October 2017

2017-10-18T09:25:41Z

← Older revision		Revision as of 09:25, 18 October 2017
Line 1:		Line 1:

	==Pterocarpus angolensis lectin complexed with Man-6==		==Pterocarpus angolensis lectin complexed with Man-6==
	<StructureSection load='2phf' size='340' side='right' caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2phf' size='340' side='right' caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pterocarpus_angolensis Pterocarpus angolensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:~~MANGANESE+(II)+ION~~'>MN</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA-D-MANNOSE~~'>~~MAN~~</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://pdbe.org/2phf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://pdbe.org/2phf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2phf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Pterocarpus angolensis~~]]		[[Category: Bleedwood tree]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 04:11, 9 February 2016

2016-02-09T04:11:38Z

← Older revision		Revision as of 04:11, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2phf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:30, 10 September 2015

2015-09-10T18:30:26Z

← Older revision		Revision as of 18:30, 10 September 2015
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://pdbe.org/2phf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2phf" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:29, 19 January 2015

2015-01-19T17:29:12Z

← Older revision		Revision as of 17:29, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L.]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A.]]		[[Category: Garcia-Pino, A]]
	[[Category: Imberty, A.]]		[[Category: Imberty, A]]
	[[Category: Loris, R.]]		[[Category: Loris, R]]
	[[Category: Wyns, L.]]		[[Category: Wyns, L]]
	[[Category: Carbohydrate]]		[[Category: Carbohydrate]]
	[[Category: High mannose]]		[[Category: High mannose]]
	[[Category: Lectin]]		[[Category: Lectin]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]

OCA at 19:58, 30 September 2014

2014-09-30T19:58:26Z

← Older revision		Revision as of 19:58, 30 September 2014
Line 1:		Line 1:
	[[Image:~~2phf~~.~~png~~\|~~left~~\|~~200px~~]]		==Pterocarpus angolensis lectin complexed with Man-6==
			<StructureSection load='2phf' size='340' side='right' caption='[[2phf]], [[Resolution\|resolution]] 2.10Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2phf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PHF FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>
			<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1q8p\|1q8p]], [[2phr\|2phr]], [[2pht\|2pht]], [[2phu\|2phu]], [[2phw\|2phw]], [[2phx\|2phx]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2phf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2phf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2phf RCSB], [http://www.ebi.ac.uk/pdbsum/2phf PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/2phf_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The crystal structure of Pterocarpus angolensis seed lectin is presented in complex with a series of high mannose (Man) oligosaccharides ranging from Man-5 to Man-9. Despite that several of the nine Man residues of Man-9 have the potential to bind in the monosaccharide-binding site, all oligomannoses are bound in the same unique way, employing the tetrasaccharide sequence Manalpha(1-2)Manalpha(1-6)[Manalpha(1-3)]Manalpha(1-. Isothermal titration calorimetry titration experiments using Man-5, Man-9, and the Man-9-containing glycoprotein soybean (Glycine max) agglutinin as ligands confirm the monovalence of Man-9 and show a 4-times higher affinity for Man-9 when it is presented to P. angolensis seed lectin in a glycoprotein context.

	~~{{STRUCTURE_2phf\| PDB=2phf \| SCENE= }}~~		How a plant lectin recognizes high mannose oligosaccharides.,Garcia-Pino A, Buts L, Wyns L, Imberty A, Loris R Plant Physiol. 2007 Aug;144(4):1733-41. Epub 2007 Jun 7. PMID:17556509<ref>PMID:17556509</ref>

	~~===Pterocarpus angolensis lectin complexed with Man-6===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_17556509}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2phf]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2PHF OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:017556509<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L.]]		[[Category: Buts, L.]]

OCA: Protected "2phf" [edit=sysop:move=sysop]

2013-01-07T12:21:02Z

Protected "2phf" [edit=sysop:move=sysop]

← Older revision	Revision as of 12:21, 7 January 2013
(No difference)