2ro2 - Revision history

OCA at 12:54, 20 December 2023

2023-12-20T12:54:19Z

← Older revision		Revision as of 12:54, 20 December 2023
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	==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==		==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==
	<StructureSection load='2ro2' size='340' side='right'caption='[[2ro2~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>		<StructureSection load='2ro2' size='340' side='right'caption='[[2ro2]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [https://pdbe.org/2ro2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [https://pdbe.org/2ro2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Dufour, D]]		[[Category: Dufour D]]
	[[Category: Flores, R]]		[[Category: Flores R]]
	[[Category: Gago, S]]		[[Category: Gago S]]
	[[Category: Gallego, J]]		[[Category: Gallego J]]
	[[Category: Pena, M ~~de la]]~~		[[Category: De la Pena M]]
	~~[[Category: Cchmvd]]~~
	~~[[Category: Hammerhead ribozyme]]~~
	~~[[Category: Heptaloop]]~~
	~~[[Category: Rna]]~~
	~~[[Category: Viroid~~]]

OCA at 06:54, 16 March 2022

2022-03-16T06:54:08Z

← Older revision		Revision as of 06:54, 16 March 2022
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	<StructureSection load='2ro2' size='340' side='right'caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2ro2' size='340' side='right'caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [~~http~~://pdbe.org/2ro2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [https://pdbe.org/2ro2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	==See Also==		==See Also==
	*[[Ribozyme\|Ribozyme]]		*[[Ribozyme 3D structures\|Ribozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:14, 10 June 2020

2020-06-10T07:14:08Z

← Older revision		Revision as of 07:14, 10 June 2020
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	==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==		==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==
	<StructureSection load='2ro2' size='340' side='right' caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2ro2' size='340' side='right'caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca.weizmann~~.~~ac.il/oca-docs~~/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://pdbe.org/2ro2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://pdbe.org/2ro2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Dufour, D]]		[[Category: Dufour, D]]
	[[Category: Flores, R]]		[[Category: Flores, R]]

OCA at 11:56, 11 August 2016

2016-08-11T11:56:57Z

← Older revision		Revision as of 11:56, 11 August 2016
Line 1:		Line 1:

	==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==		==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==
	<StructureSection load='2ro2' size='340' side='right' caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2ro2' size='340' side='right' caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://pdbe.org/2ro2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ro2 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2ro2" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 15:38, 19 January 2015

2015-01-19T15:38:31Z

← Older revision		Revision as of 15:38, 19 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Dufour, D.]]		[[Category: Dufour, D]]
	[[Category: Flores, R.]]		[[Category: Flores, R]]
	[[Category: Gago, S.]]		[[Category: Gago, S]]
	[[Category: Gallego, J.]]		[[Category: Gallego, J]]
	[[Category: Pena, M de la.]]		[[Category: Pena, M de la]]
	[[Category: Cchmvd]]		[[Category: Cchmvd]]
	[[Category: Hammerhead ribozyme]]		[[Category: Hammerhead ribozyme]]

OCA at 00:53, 2 October 2014

2014-10-02T00:53:17Z

← Older revision		Revision as of 00:53, 2 October 2014
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	[[~~Image~~:2ro2.~~png\|left\|200px~~]]		==Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme==
			<StructureSection load='2ro2' size='340' side='right' caption='[[2ro2]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RO2 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ro2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ro2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ro2 RCSB], [http://www.ebi.ac.uk/pdbsum/2ro2 PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Loop-loop tertiary interactions play a key role in the folding and catalytic activity of natural hammerhead ribozymes. Using a combination of NMR spectroscopy, site-directed mutagenesis and kinetic and infectivity analyses, we have examined the structure and function of loops 1 and 2 of the (+) and (-) hammerheads of chrysanthemum chlorotic mottle viroid RNA. In both hammerheads, loop 1 is a heptanucleotide hairpin loop containing an exposed U at its 5' side and an extrahelical U at its 3'-side critical for the catalytic activity of the ribozyme in vitro and for viroid infectivity in vivo, whereas loop 2 has a key opened A at its 3'-side. These structural features promote a specific loop-loop interaction motif across the major groove. The essential features of this tertiary structure element, base pairing between the 5' U of loop 1 and the 3' A of loop 2, and interaction of the extrahelical pyrimidine of loop 1 with loop 2, are likely shared by a significant fraction of natural hammerheads.

	~~{{STRUCTURE_2ro2\| PDB=2ro2 \| SCENE= }}~~		Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads.,Dufour D, de la Pena M, Gago S, Flores R, Gallego J Nucleic Acids Res. 2008 Nov 29. PMID:19043070<ref>PMID:19043070</ref>

	~~===Solution structure of domain I~~ of the ~~negative polarity CChMVd hammerhead ribozyme===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_19043070}}~~

	~~==About this Structure==~~
	~~[[2ro2]] is a 1 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il/oca-bin~~/~~ocashort?id=2RO2 OCA].~~

	==See Also==		==See Also==
	*[[Ribozyme\|Ribozyme]]		*[[Ribozyme\|Ribozyme]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:019043070<~~/~~ref~~><~~references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Dufour, D.]]		[[Category: Dufour, D.]]
	[[Category: Flores, R.]]		[[Category: Flores, R.]]

OCA at 11:05, 20 October 2012

2012-10-20T11:05:34Z

← Older revision		Revision as of 11:05, 20 October 2012
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	==About this Structure==		==About this Structure==
	[[2ro2]] is a 1 chain structure ~~of [[Ribozyme]]~~. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].		[[2ro2]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].

	==See Also==		==See Also==

OCA: Protected "2ro2" [edit=sysop:move=sysop]

2012-07-26T04:12:59Z

Protected "2ro2" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:12, 26 July 2012
(No difference)

OCA at 04:12, 26 July 2012

2012-07-26T04:12:57Z

← Older revision		Revision as of 04:12, 26 July 2012
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	~~{{Seed}}~~
	[[Image:2ro2.png\|left\|200px]]		[[Image:2ro2.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2ro2", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2ro2\| PDB=2ro2 \| SCENE= }}		{{STRUCTURE_2ro2\| PDB=2ro2 \| SCENE= }}

	===Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme===		===Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_19043070}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 19043070 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_19043070}}		{{ABSTRACT_PUBMED_19043070}}

	==About this Structure==		==About this Structure==
	~~2RO2~~ is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].		[[2ro2]] is a 1 chain structure of [[Ribozyme]]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].

			==See Also==
			*[[Ribozyme\|Ribozyme]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~19043070~~</ref><references group="xtra"/>		<ref group="xtra">PMID:019043070</ref><references group="xtra"/>
	[[Category: Dufour, D.]]		[[Category: Dufour, D.]]
	[[Category: Flores, R.]]		[[Category: Flores, R.]]
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	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Viroid]]		[[Category: Viroid]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:46:37 2010''~~

OCA at 08:37, 22 September 2010

2010-09-22T08:37:39Z

← Older revision		Revision as of 08:37, 22 September 2010
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	==About this Structure==		==About this Structure==
	2RO2 is a ~~[[Single protein]]~~ structure. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].		2RO2 is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RO2 OCA].

	==Reference==		==Reference==
	~~Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid~~: ~~a loop-loop interaction motif conserved in most natural hammerheads.~~, ~~Dufour~~ D, ~~de la Pena M, Gago S, Flores~~ R~~, Gallego J, Nucleic Acids Res~~. ~~2008 Nov 29. PMID:~~[~~http~~:~~//www~~.~~ncbi.nlm.nih.gov/pubmed/19043070 19043070~~]		<ref group="xtra">PMID:19043070</ref><references group="xtra"/>
	[[Category: ~~Single protein~~]]		[[Category: Dufour, D.]]
	[[Category: ~~Pdbx_ordinal=~~, ~~<PDBx:audit_author~~.]]		[[Category: Flores, R.]]
			[[Category: Gago, S.]]
			[[Category: Gallego, J.]]
			[[Category: Pena, M de la.]]
	[[Category: Cchmvd]]		[[Category: Cchmvd]]
	[[Category: Hammerhead ribozyme]]		[[Category: Hammerhead ribozyme]]
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	[[Category: Viroid]]		[[Category: Viroid]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Mar 4 20~~:12:~~28 2009~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:46:37 2010''