2vb1 - Revision history

OCA at 07:39, 8 March 2023

2023-03-08T07:39:08Z

← Older revision		Revision as of 07:39, 8 March 2023
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	<StructureSection load='2vb1' size='340' side='right'caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>		<StructureSection load='2vb1' size='340' side='right'caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</div></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [https://pdbe.org/2vb1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [https://www.ebi.ac.uk/pdbsum/2vb1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vb1 ProSAT]</span></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [~~http~~://pdbe.org/2vb1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vb1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vb1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Lysozyme]]~~		[[Category: Alkire R]]
	[[Category: Alkire, R]]		[[Category: Dauter M]]
	[[Category: Dauter, M]]		[[Category: Dauter Z]]
	[[Category: Dauter, Z]]		[[Category: Joachimiak A]]
	[[Category: Joachimiak, A]]		[[Category: Wang J]]
	[[Category: Wang, J]]
	~~[[Category: Allergen]]~~
	~~[[Category: Antimicrobial]]~~
	~~[[Category: Atomic resolution]]~~
	~~[[Category: Bacteriolytic enzyme]]~~
	~~[[Category: Glycosidase]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Triclinic hewl~~]]

OCA at 21:25, 18 November 2020

2020-11-18T21:25:14Z

← Older revision		Revision as of 21:25, 18 November 2020
Line 3:		Line 3:
	<StructureSection load='2vb1' size='340' side='right'caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>		<StructureSection load='2vb1' size='340' side='right'caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://pdbe.org/2vb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vb1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://pdbe.org/2vb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vb1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:10, 10 May 2019

2019-05-10T12:10:44Z

← Older revision		Revision as of 12:10, 10 May 2019
Line 1:		Line 1:

	==HEWL at 0.65 angstrom resolution==		==HEWL at 0.65 angstrom resolution==
	<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>		<StructureSection load='2vb1' size='340' side='right'caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
			[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Alkire, R]]		[[Category: Alkire, R]]

OCA at 08:42, 12 September 2018

2018-09-12T08:42:56Z

← Older revision		Revision as of 08:42, 12 September 2018
Line 1:		Line 1:
	==HEWL AT 0.65 ~~ANGSTROM RESOLUTION~~==
			==HEWL at 0.65 angstrom resolution==
	<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>		<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chick Chick~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://pdbe.org/2vb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://pdbe.org/2vb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vb1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/2vb1_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/2vb1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 36:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Chick~~]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Alkire, R]]		[[Category: Alkire, R]]

OCA at 03:22, 10 February 2016

2016-02-10T03:22:06Z

← Older revision		Revision as of 03:22, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>		<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Gallus_gallus Gallus gallus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://pdbe.org/2vb1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vb1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vb1" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Gallus gallus~~]]		[[Category: Chick]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Alkire, R]]		[[Category: Alkire, R]]

OCA at 11:27, 25 December 2014

2014-12-25T11:27:05Z

← Older revision		Revision as of 11:27, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Alkire, R.]]		[[Category: Alkire, R]]
	[[Category: Dauter, M.]]		[[Category: Dauter, M]]
	[[Category: Dauter, Z.]]		[[Category: Dauter, Z]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A]]
	[[Category: Wang, J.]]		[[Category: Wang, J]]
	[[Category: Allergen]]		[[Category: Allergen]]
	[[Category: Antimicrobial]]		[[Category: Antimicrobial]]
Line 46:		Line 48:
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	~~[[Category: Lysozyme]]~~
	[[Category: Triclinic hewl]]		[[Category: Triclinic hewl]]

OCA at 06:56, 29 September 2014

2014-09-29T06:56:43Z

← Older revision		Revision as of 06:56, 29 September 2014
Line 1:		Line 1:
	[[Image:~~2vb1~~.~~png~~\|~~left~~\|~~200px~~]]		==HEWL AT 0.65 ANGSTROM RESOLUTION==
			<StructureSection load='2vb1' size='340' side='right' caption='[[2vb1]], [[Resolution\|resolution]] 0.65Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VB1 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1aki\|1aki]], [[1azf\|1azf]], [[1b2k\|1b2k]], [[1bgi\|1bgi]], [[1bvx\|1bvx]], [[1bwj\|1bwj]], [[1c10\|1c10]], [[1dpw\|1dpw]], [[1dqj\|1dqj]], [[1f0w\|1f0w]], [[1f10\|1f10]], [[1fdl\|1fdl]], [[1flq\|1flq]], [[1flu\|1flu]], [[1flw\|1flw]], [[1fn5\|1fn5]], [[1g7i\|1g7i]], [[1g7l\|1g7l]], [[1gwd\|1gwd]], [[1gxv\|1gxv]], [[1h6m\|1h6m]], [[1hc0\|1hc0]], [[1hel\|1hel]], [[1hen\|1hen]], [[1heo\|1heo]], [[132l\|132l]], [[193l\|193l]], [[194l\|194l]], [[1a2y\|1a2y]], [[1at5\|1at5]], [[1at6\|1at6]], [[1b0d\|1b0d]], [[1bhz\|1bhz]], [[1bvk\|1bvk]], [[1bwh\|1bwh]], [[1bwi\|1bwi]], [[1c08\|1c08]], [[1dpx\|1dpx]], [[1e8l\|1e8l]], [[1f3j\|1f3j]], [[1fly\|1fly]], [[1g7h\|1g7h]], [[1g7j\|1g7j]], [[1g7m\|1g7m]], [[1gpq\|1gpq]], [[1gxx\|1gxx]], [[1h87\|1h87]], [[1hem\|1hem]], [[1heq\|1heq]], [[1her\|1her]], [[1hsw\|1hsw]], [[1hep\|1hep]], [[1hew\|1hew]], [[1hf4\|1hf4]], [[1ic4\|1ic4]], [[1ic5\|1ic5]], [[1ic7\|1ic7]], [[1iee\|1iee]], [[1io5\|1io5]], [[1ioq\|1ioq]], [[1ios\|1ios]], [[1iot\|1iot]], [[1ir7\|1ir7]], [[1ir9\|1ir9]], [[1j1x\|1j1x]], [[1ja2\|1ja2]], [[1ja6\|1ja6]], [[1jis\|1jis]], [[1jit\|1jit]], [[1jj0\|1jj0]], [[1jj1\|1jj1]], [[1jj3\|1jj3]], [[1kip\|1kip]], [[1kir\|1kir]], [[1lcn\|1lcn]], [[1hsx\|1hsx]], [[1ior\|1ior]], [[1ir8\|1ir8]], [[1j1o\|1j1o]], [[1j1p\|1j1p]], [[1ja4\|1ja4]], [[1ja7\|1ja7]], [[1jiy\|1jiy]], [[1jpo\|1jpo]], [[1jto\|1jto]], [[1jtt\|1jtt]], [[1kiq\|1kiq]], [[1kxw\|1kxw]], [[1kxx\|1kxx]], [[1kxy\|1kxy]], [[1lj3\|1lj3]], [[1lj4\|1lj4]], [[1ljf\|1ljf]], [[1ljh\|1ljh]], [[1ljj\|1ljj]], [[1ljk\|1ljk]], [[1lkr\|1lkr]], [[1lks\|1lks]], [[1lpi\|1lpi]], [[1lsa\|1lsa]], [[1lse\|1lse]], [[1lje\|1lje]], [[1ljg\|1ljg]], [[1lji\|1lji]], [[1lma\|1lma]], [[1lsb\|1lsb]], [[1lsc\|1lsc]], [[1lsd\|1lsd]], [[1lsf\|1lsf]], [[1lsm\|1lsm]], [[1lsn\|1lsn]], [[1lsy\|1lsy]], [[1lys\|1lys]], [[1lz9\|1lz9]], [[1lzc\|1lzc]], [[1lze\|1lze]], [[1lzg\|1lzg]], [[1lzh\|1lzh]], [[1mel\|1mel]], [[1n4f\|1n4f]], [[1nby\|1nby]], [[1ndg\|1ndg]], [[1qio\|1qio]], [[1ri8\|1ri8]], [[1rjc\|1rjc]], [[1sf6\|1sf6]], [[1sfg\|1sfg]], [[1lsg\|1lsg]], [[1lsz\|1lsz]], [[1lyo\|1lyo]], [[1lyz\|1lyz]], [[1lz8\|1lz8]], [[1lza\|1lza]], [[1lzb\|1lzb]], [[1lzd\|1lzd]], [[1lzn\|1lzn]], [[1lzt\|1lzt]], [[1mlc\|1mlc]], [[1nbz\|1nbz]], [[1ndm\|1ndm]], [[1p2c\|1p2c]], [[1ps5\|1ps5]], [[1qtk\|1qtk]], [[1rcm\|1rcm]], [[1rfp\|1rfp]], [[1sf4\|1sf4]], [[1sf7\|1sf7]], [[1sfb\|1sfb]], [[1sq2\|1sq2]], [[1t3p\|1t3p]], [[1t6v\|1t6v]], [[1ua6\|1ua6]], [[1uc0\|1uc0]], [[1uco\|1uco]], [[1uib\|1uib]], [[1uif\|1uif]], [[1vat\|1vat]], [[1vdp\|1vdp]], [[1vds\|1vds]], [[1vdt\|1vdt]], [[1ved\|1ved]], [[1vfb\|1vfb]], [[1w6z\|1w6z]], [[1wtm\|1wtm]], [[1wtn\|1wtn]], [[1xej\|1xej]], [[1xgq\|1xgq]], [[1yik\|1yik]], [[1ykx\|1ykx]], [[1yl0\|1yl0]], [[1yqv\|1yqv]], [[1zmy\|1zmy]], [[2aub\|2aub]], [[2bly\|2bly]], [[2bpu\|2bpu]], [[1uia\|1uia]], [[1uic\|1uic]], [[1uid\|1uid]], [[1uie\|1uie]], [[1uig\|1uig]], [[1uih\|1uih]], [[1uuz\|1uuz]], [[1v7s\|1v7s]], [[1v7t\|1v7t]], [[1vau\|1vau]], [[1vdq\|1vdq]], [[1xei\|1xei]], [[1xek\|1xek]], [[1xfp\|1xfp]], [[1xgp\|1xgp]], [[1yil\|1yil]], [[1yky\|1yky]], [[1ykz\|1ykz]], [[1yl1\|1yl1]], [[1z55\|1z55]], [[2a6u\|2a6u]], [[2a7d\|2a7d]], [[2a7f\|2a7f]], [[2b5z\|2b5z]], [[2blx\|2blx]], [[2c8o\|2c8o]], [[2c8p\|2c8p]], [[2cds\|2cds]], [[2d4i\|2d4i]], [[2d6b\|2d6b]], [[2d91\|2d91]], [[2lyo\|2lyo]], [[3hfm\|3hfm]], [[3lyt\|3lyt]], [[3lyz\|3lyz]], [[4lyo\|4lyo]], [[5lyz\|5lyz]], [[6lyt\|6lyt]], [[6lyz\|6lyz]], [[7lyz\|7lyz]], [[8lyz\|8lyz]], [[2cgi\|2cgi]], [[2d4j\|2d4j]], [[2d4k\|2d4k]], [[2fbb\|2fbb]], [[2hfm\|2hfm]], [[2iff\|2iff]], [[2lym\|2lym]], [[2lyz\|2lyz]], [[2lzh\|2lzh]], [[2lzt\|2lzt]], [[3lym\|3lym]], [[3lyo\|3lyo]], [[3lzt\|3lzt]], [[4lym\|4lym]], [[4lyt\|4lyt]], [[4lyz\|4lyz]], [[4lzt\|4lzt]], [[5lym\|5lym]], [[5lyt\|5lyt]]</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vb1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vb1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vb1 RCSB], [http://www.ebi.ac.uk/pdbsum/2vb1 PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/2vb1_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The crystal structure of triclinic hen egg-white lysozyme (HEWL) has been refined against diffraction data extending to 0.65 A resolution measured at 100 K using synchrotron radiation. Refinement with anisotropic displacement parameters and with the removal of stereochemical restraints for the well ordered parts of the structure converged with a conventional R factor of 8.39% and an R(free) of 9.52%. The use of full-matrix refinement provided an estimate of the variances in the derived parameters. In addition to the 129-residue protein, a total of 170 water molecules, nine nitrate ions, one acetate ion and three ethylene glycol molecules were located in the electron-density map. Eight sections of the main chain and many side chains were modeled with alternate conformations. The occupancies of the water sites were refined and this step is meaningful when assessed by use of the free R factor. A detailed description and comparison of the structure are made with reference to the previously reported triclinic HEWL structures refined at 0.925 A (at the low temperature of 120 K) and at 0.95 A resolution (at room temperature).

	~~{{STRUCTURE_2vb1\| PDB=2vb1 \| SCENE= }}~~		Triclinic lysozyme at 0.65 A resolution.,Wang J, Dauter M, Alkire R, Joachimiak A, Dauter Z Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1254-68. Epub 2007, Nov 16. PMID:18084073<ref>PMID:18084073</ref>

	~~===HEWL AT 0.65 ANGSTROM RESOLUTION===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18084073}}~~

	~~==About this Structure==~~
	~~[[2vb1]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Gallus_gallus Gallus gallus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].~~

	==See Also==		==See Also==
	*[[~~Hen Egg-White (HEW)~~ Lysozyme\|~~Hen Egg-White (HEW)~~ Lysozyme]]		*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:018084073<~~/~~ref~~><~~references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]

OCA at 16:09, 20 October 2012

2012-10-20T16:09:33Z

← Older revision		Revision as of 16:09, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[2vb1]] is a 1 chain structure ~~of [[Hen Egg-White (HEW) Lysozyme]]~~ with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].		[[2vb1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].

	==See Also==		==See Also==

OCA: Protected "2vb1" [edit=sysop:move=sysop]

2012-07-26T20:47:06Z

Protected "2vb1" [edit=sysop:move=sysop]

← Older revision	Revision as of 20:47, 26 July 2012
(No difference)

OCA at 20:47, 26 July 2012

2012-07-26T20:47:05Z

← Older revision		Revision as of 20:47, 26 July 2012
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	~~{{Seed}}~~
	[[Image:2vb1.png\|left\|200px]]		[[Image:2vb1.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2vb1", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2vb1\| PDB=2vb1 \| SCENE= }}		{{STRUCTURE_2vb1\| PDB=2vb1 \| SCENE= }}

	===HEWL AT 0.65 ANGSTROM RESOLUTION===		===HEWL AT 0.65 ANGSTROM RESOLUTION===


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	==About this Structure==		==About this Structure==
	~~2VB1~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].		[[2vb1]] is a 1 chain structure of [[Hen Egg-White (HEW) Lysozyme]] with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].

			==See Also==
			*[[Hen Egg-White (HEW) Lysozyme\|Hen Egg-White (HEW) Lysozyme]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~18084073~~</ref><references group="xtra"/>		<ref group="xtra">PMID:018084073</ref><references group="xtra"/>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
Line 39:		Line 30:
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Triclinic hewl]]		[[Category: Triclinic hewl]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:01:56 2009''~~