2vbk - Revision history

OCA at 15:13, 13 December 2023

2023-12-13T15:13:47Z

← Older revision		Revision as of 15:13, 13 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_virus_Sf6 Shigella virus Sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_virus_Sf6 Shigella virus Sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [https://pdbe.org/2vbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [https://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [https://pdbe.org/2vbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [https://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:

	==See Also==		==See Also==
	*[[Tailspike protein\|Tailspike protein]]		*[[Tailspike protein 3D structures\|Tailspike protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 20:54, 12 April 2023

2023-04-12T20:54:39Z

← Older revision		Revision as of 20:54, 12 April 2023
Line 3:		Line 3:
	<StructureSection load='2vbk' size='340' side='right'caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2vbk' size='340' side='right'caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpsfv Bpsfv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_virus_Sf6 Shigella virus Sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vbe\|2vbe]], [[2vbm\|2vbm]]</div></td></tr>~~
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [https://pdbe.org/2vbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [https://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [https://pdbe.org/2vbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [https://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/~~TSPE_BPSFV TSPE_BPSFV]~~] Non-covalently bound to the neck of the phage capsid and mediating attachment of the viral particle to host cell-surface polysaccharide. It displays endorhamnosidase enzymatic activity, hydrolyzing the alpha-1,3-O-glycosidic linkage between rhamnose and galactose of the O-antigen polysaccharide.		[https://www.uniprot.org/uniprot/FIBER_BPSFV FIBER_BPSFV] Non-covalently bound to the neck of the phage capsid and mediating attachment of the viral particle to host cell-surface polysaccharide. It displays endorhamnosidase enzymatic activity, hydrolyzing the alpha-1,3-O-glycosidic linkage between rhamnose and galactose of the O-antigen polysaccharide.<ref>PMID:18462681</ref> <ref>PMID:12424253</ref> <ref>PMID:6284</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Bpsfv]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Barbirz, S]]		[[Category: Shigella virus Sf6]]
	[[Category: Freiberg, A]]		[[Category: Barbirz S]]
	[[Category: Heinemann, U]]		[[Category: Freiberg A]]
	[[Category: Heinle, K]]		[[Category: Heinemann U]]
	[[Category: Mueller~~, J J~~]]		[[Category: Heinle K]]
	[[Category: Seckler, R]]		[[Category: Mueller JJ]]
	~~[[Category: Endorhamnosidase]]~~		[[Category: Seckler R]]
	~~[[Category: Hydrolase]]~~
	~~[[Category: Right-handed parallel beta-helix]]~~
	~~[[Category: Tailspike]]~~
	~~[[Category: Viral adhesion protein]]~~
	~~[[Category: Viral protein~~]]

OCA at 10:43, 7 July 2021

2021-07-07T10:43:55Z

← Older revision		Revision as of 10:43, 7 July 2021
Line 3:		Line 3:
	<StructureSection load='2vbk' size='340' side='right'caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2vbk' size='340' side='right'caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpsfv Bpsfv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpsfv Bpsfv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vbe\|2vbe]], [[2vbm\|2vbm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vbe\|2vbe]], [[2vbm\|2vbm]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [~~http~~://pdbe.org/2vbk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [https://pdbe.org/2vbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [https://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/TSPE_BPSFV TSPE_BPSFV]] Non-covalently bound to the neck of the phage capsid and mediating attachment of the viral particle to host cell-surface polysaccharide. It displays endorhamnosidase enzymatic activity, hydrolyzing the alpha-1,3-O-glycosidic linkage between rhamnose and galactose of the O-antigen polysaccharide.		[[https://www.uniprot.org/uniprot/TSPE_BPSFV TSPE_BPSFV]] Non-covalently bound to the neck of the phage capsid and mediating attachment of the viral particle to host cell-surface polysaccharide. It displays endorhamnosidase enzymatic activity, hydrolyzing the alpha-1,3-O-glycosidic linkage between rhamnose and galactose of the O-antigen polysaccharide.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 2vbk" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2vbk" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Tailspike protein\|Tailspike protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:14, 23 May 2019

2019-05-23T07:14:26Z

← Older revision		Revision as of 07:14, 23 May 2019
Line 1:		Line 1:

	==NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6==		==NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6==
	<StructureSection load='2vbk' size='340' side='right' caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2vbk' size='340' side='right'caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpsfv Bpsfv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpsfv Bpsfv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Bpsfv]]		[[Category: Bpsfv]]
			[[Category: Large Structures]]
	[[Category: Barbirz, S]]		[[Category: Barbirz, S]]
	[[Category: Freiberg, A]]		[[Category: Freiberg, A]]

OCA at 14:17, 4 August 2016

2016-08-04T14:17:37Z

← Older revision		Revision as of 14:17, 4 August 2016
Line 1:		Line 1:

	==NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6==		==NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6==
	<StructureSection load='2vbk' size='340' side='right' caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2vbk' size='340' side='right' caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Shigella_phage_sf6 Shigella phage sf6~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpsfv Bpsfv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vbe\|2vbe]], [[2vbm\|2vbm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vbe\|2vbe]], [[2vbm\|2vbm]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [http://www.ebi.ac.uk/pdbsum/2vbk PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [http://pdbe.org/2vbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [http://www.ebi.ac.uk/pdbsum/2vbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vbk" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Shigella phage sf6~~]]		[[Category: Bpsfv]]
	[[Category: Barbirz, S]]		[[Category: Barbirz, S]]
	[[Category: Freiberg, A]]		[[Category: Freiberg, A]]

OCA at 10:04, 25 December 2014

2014-12-25T10:04:45Z

← Older revision		Revision as of 10:04, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [http://www.ebi.ac.uk/pdbsum/2vbk PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [http://www.ebi.ac.uk/pdbsum/2vbk PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/TSPE_BPSFV TSPE_BPSFV]] Non-covalently bound to the neck of the phage capsid and mediating attachment of the viral particle to host cell-surface polysaccharide. It displays endorhamnosidase enzymatic activity, hydrolyzing the alpha-1,3-O-glycosidic linkage between rhamnose and galactose of the O-antigen polysaccharide.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Shigella phage sf6]]		[[Category: Shigella phage sf6]]
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S]]
	[[Category: Freiberg, A.]]		[[Category: Freiberg, A]]
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U]]
	[[Category: Heinle, K.]]		[[Category: Heinle, K]]
	[[Category: Mueller, J J.]]		[[Category: Mueller, J J]]
	[[Category: Seckler, R.]]		[[Category: Seckler, R]]
	[[Category: Endorhamnosidase]]		[[Category: Endorhamnosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 11:28, 20 October 2014

2014-10-20T11:28:30Z

← Older revision		Revision as of 11:28, 20 October 2014
Line 1:		Line 1:
	[[~~Image~~:~~2vbk~~.~~png~~\|~~left~~\|~~200px~~]]		==NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6==
			<StructureSection load='2vbk' size='340' side='right' caption='[[2vbk]], [[Resolution\|resolution]] 1.25Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shigella_phage_sf6 Shigella phage sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBK FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGR:R-1,2-PROPANEDIOL'>PGR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vbe\|2vbe]], [[2vbm\|2vbm]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vbk RCSB], [http://www.ebi.ac.uk/pdbsum/2vbk PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Sf6 belongs to the Podoviridae family of temperate bacteriophages that infect gram-negative bacteria by insertion of their double-stranded DNA. They attach to their hosts specifically via their tailspike proteins. The 1.25 A crystal structure of Shigella phage Sf6 tailspike protein (Sf6 TSP) reveals a conserved architecture with a central, right-handed beta helix. In the trimer of Sf6 TSP, the parallel beta helices form a left-handed, coiled-beta coil with a pitch of 340 A. The C-terminal domain consists of a beta sandwich reminiscent of viral capsid proteins. Further crystallographic and biochemical analyses show a Shigella cell wall O-antigen fragment to bind to an endorhamnosidase active site located between two beta-helix subunits each anchoring one catalytic carboxylate. The functionally and structurally related bacteriophage, P22 TSP, lacks sequence identity with Sf6 TSP and has its active sites on single subunits. Sf6 TSP may serve as an example for the evolution of different host specificities on a similar general architecture.

	~~{{STRUCTURE_2vbk\| PDB=2vbk \| SCENE= }}~~		An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.,Muller JJ, Barbirz S, Heinle K, Freiberg A, Seckler R, Heinemann U Structure. 2008 May;16(5):766-75. PMID:18462681<ref>PMID:18462681</ref>

	~~===NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18462681}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2vbk]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Shigella_phage_sf6 Shigella phage sf6]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:018462681<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Shigella phage sf6]]		[[Category: Shigella phage sf6]]
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]

OCA: Protected "2vbk" [edit=sysop:move=sysop]

2013-01-07T21:43:12Z

Protected "2vbk" [edit=sysop:move=sysop]

← Older revision	Revision as of 21:43, 7 January 2013
(No difference)

OCA at 21:43, 7 January 2013

2013-01-07T21:43:09Z

← Older revision		Revision as of 21:43, 7 January 2013
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:2vbk.png\|left\|200px]]		[[Image:2vbk.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2vbk", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2vbk\| PDB=2vbk \| SCENE= }}		{{STRUCTURE_2vbk\| PDB=2vbk \| SCENE= }}

	===NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6===		===NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6===

			{{ABSTRACT_PUBMED_18462681}}

	==About this Structure==		==About this Structure==
	~~2VBK~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_sf6 Enterobacteria~~ phage sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA].		[[2vbk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shigella_phage_sf6 Shigella phage sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA].
	[[Category: ~~Enterobacteria~~ phage sf6]]
			==Reference==
			<ref group="xtra">PMID:018462681</ref><references group="xtra"/>
			[[Category: Shigella phage sf6]]
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]
	[[Category: Freiberg, A.]]		[[Category: Freiberg, A.]]
Line 28:		Line 25:
	[[Category: Viral adhesion protein]]		[[Category: Viral adhesion protein]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:26:25 2009''~~

OCA at 09:26, 22 March 2009

2009-03-22T09:26:26Z

← Older revision		Revision as of 09:26, 22 March 2009
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
	2VBK is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_sf6 Enterobacteria phage sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA].		2VBK is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_sf6 Enterobacteria phage sf6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBK OCA].
	[[Category: Enterobacteria phage sf6]]		[[Category: Enterobacteria phage sf6]]
	~~[[Category: Single protein]]~~
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]
	[[Category: Freiberg, A.]]		[[Category: Freiberg, A.]]
Line 30:		Line 29:
	[[Category: Viral protein]]		[[Category: Viral protein]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Jul 6 00~~:59:~~14 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:26:25 2009''